PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517244.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 353aa MW: 39565.5 Da PI: 5.0864

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517244.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.4	1.9e-11	196	239	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr ++Pk + K++ +iL +++Y+k+L XP_023517244.1 196 LMAERRRRRRLNDRLSMLRAIVPKiS------KMDRTSILGDTIDYVKEL 239 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MFYYSVLHFL HTQRGKKMEL TQYGFLEELL ASTPWTSSSS SSSSSYSNGF NDFFPNGSNF 60 SSFEEIPQMG TSISPHFPGF QTPTDFSFAD QHLYGSFLEG FALPEVDSLS YTKNNETPPF 120 VSLEEISDKN SGFPPTAMEE EEFGFMECEA APNVCKQEME VMGGRETNDS KMGVAELGKR 180 RSNKAKKLDG QPSKNLMAER RRRRRLNDRL SMLRAIVPKI SKMDRTSILG DTIDYVKELL 240 ERINNLKEED SKHASLNGIS KERKSNEVLF DVERKEMETR IGICCTTRPG LLLSTVNTLE 300 ALGLEIQQCV ISCFNDFSMQ ASCSEGSSQK AVPSSDDIKE ALFRNAGYGG KCL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MFYYSVLHFL HTQRGKKMEL TQYGFLEELL ASTPWTSSSS SSSSSYSNGF NDFFPNGSNF  60
SSFEEIPQMG TSISPHFPGF QTPTDFSFAD QHLYGSFLEG FALPEVDSLS YTKNNETPPF  120
VSLEEISDKN SGFPPTAMEE EEFGFMECEA APNVCKQEME VMGGRETNDS KMGVAELGKR  180
RSNKAKKLDG QPSKNLMAER RRRRRLNDRL SMLRAIVPKI SKMDRTSILG DTIDYVKELL  240
ERINNLKEED SKHASLNGIS KERKSNEVLF DVERKEMETR IGICCTTRPG LLLSTVNTLE  300
ALGLEIQQCV ISCFNDFSMQ ASCSEGSSQK AVPSSDDIKE ALFRNAGYGG KCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	206	ERRRRRRL
2	200	205	RRRRRR
3	203	210	RRRLNDRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-67	bHLH family protein