PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517021.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 480aa MW: 51140.8 Da PI: 8.7837

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517021.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023517021.1 55 FVCEICNKGFQRDQNLQLHRRGH 77 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MPVDFDSSSP ASGEPTVSTP GNSAVRKKRN LPGMPDPEAE VIALSPKTLL ATNRFVCEIC 60 NKGFQRDQNL QLHRRGHNLP WNLRRRSSKE VKKKVYVCPE SSCVHHDPSR ALGDLTGIKK 120 HFCRKHGEKK WKCGKCSKNY AVQSDCKAHS KICATREYKC DCGALFNRRD SFITHRAFCD 180 VLAEERARAL LKPVGKPNPE PSPPPPPSPP PPSPPQSTGE PTTVLAVPSQ ELPENPLQCI 240 EEAPGMSGTS RSSSSSSSNG STRSSRFAGL FASSTTSMSL QPPRPYTDLM QAMACSDRSP 300 DYAPSSTIEP ISLCLAMNQG PQMFGTASQD HRPYLPMPHP AMSATALLQK AAQVGAAASN 360 ASLLRGLGLV SSSSAAAQQE SLAWNHQRRV EPDGVSIAAG LGLGLPYDGN SGLKELIRGN 420 HSMFAPKHTT LDFLGLGMAA GGSPNSGLAA LITSIGDVTA TTTGSYGATD ISTIDMNTNH

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MPVDFDSSSP ASGEPTVSTP GNSAVRKKRN LPGMPDPEAE VIALSPKTLL ATNRFVCEIC  60
NKGFQRDQNL QLHRRGHNLP WNLRRRSSKE VKKKVYVCPE SSCVHHDPSR ALGDLTGIKK  120
HFCRKHGEKK WKCGKCSKNY AVQSDCKAHS KICATREYKC DCGALFNRRD SFITHRAFCD  180
VLAEERARAL LKPVGKPNPE PSPPPPPSPP PPSPPQSTGE PTTVLAVPSQ ELPENPLQCI  240
EEAPGMSGTS RSSSSSSSNG STRSSRFAGL FASSTTSMSL QPPRPYTDLM QAMACSDRSP  300
DYAPSSTIEP ISLCLAMNQG PQMFGTASQD HRPYLPMPHP AMSATALLQK AAQVGAAASN  360
ASLLRGLGLV SSSSAAAQQE SLAWNHQRRV EPDGVSIAAG LGLGLPYDGN SGLKELIRGN  420
HSMFAPKHTT LDFLGLGMAA GGSPNSGLAA LITSIGDVTA TTTGSYGATD ISTIDMNTNH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-127	C2H2 family protein