PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517019.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 512aa MW: 53958.8 Da PI: 8.6401

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517019.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023517019.1 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP
2	zf-C2H2	11.6	0.00088	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_023517019.1 132 WKCGKCSKKYAVQSDWKAHSKIC 154 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MSADVEDSSI ASIEGSVSSP GAKSATKKKR NLPGMPDPEA EVIALSPKTL LATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRSSK EVKKKVYVCP ESSCVHHDPS RALGDLTGIK 120 KHFCRKHGEK KWKCGKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFNRR DSFITHRAFC 180 DALAEERAKA QLKPVDKPDL DPDIGDSQTT VAKPNPEPSP PSPPPPSSPP QSTAEPTTVL 240 PVPSQELPEI PLQYIEEAPG MAAATSGSGS SSSSSSSSKS ASSNSSTRSS GFAGLFASST 300 TSISLQPPRP PFTNLMQAMA CSDRSSDYAP SSTIEPISLC LAMNQGPPMF GTASQDLRPY 360 VPMPHPAMSA TALLQRAAQM GAAASSASLL RGLGLVSSSS SAAQQESLPW NHQRQVEPDG 420 VSIAAGLGLG LPCDGNSGLK ELIRGNHSMF APKHTTLDFL GLGMAAGGSP NSGLAALITS 480 VGSSVDVATT AQSYPGGGGG DISGRQDMNR SN

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MSADVEDSSI ASIEGSVSSP GAKSATKKKR NLPGMPDPEA EVIALSPKTL LATNRFVCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRSSK EVKKKVYVCP ESSCVHHDPS RALGDLTGIK  120
KHFCRKHGEK KWKCGKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFNRR DSFITHRAFC  180
DALAEERAKA QLKPVDKPDL DPDIGDSQTT VAKPNPEPSP PSPPPPSSPP QSTAEPTTVL  240
PVPSQELPEI PLQYIEEAPG MAAATSGSGS SSSSSSSSKS ASSNSSTRSS GFAGLFASST  300
TSISLQPPRP PFTNLMQAMA CSDRSSDYAP SSTIEPISLC LAMNQGPPMF GTASQDLRPY  360
VPMPHPAMSA TALLQRAAQM GAAASSASLL RGLGLVSSSS SAAQQESLPW NHQRQVEPDG  420
VSIAAGLGLG LPCDGNSGLK ELIRGNHSMF APKHTTLDFL GLGMAAGGSP NSGLAALITS  480
VGSSVDVATT AQSYPGGGGG DISGRQDMNR SN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-107	C2H2 family protein