PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516975.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 608aa MW: 67595.3 Da PI: 7.3183

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516975.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.5	8.4e-07	315	336	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC f +G C++G++C+F+H+ XP_023516975.1 315 LCFKFTSSGSCPRGEKCNFHHD 336 56666778*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MSPPRILLCG DVLGRLNQLY KRVVSVNKSA GPFDALLCVG QFFPDSTEQL DEFMDYVEGR 60 SVIPLSTYFI GDYGVGAAKV LLASSRDSGN QGFKMDGLKI CANLHWLKGS GKFTLQGLSL 120 AYLSGRRSSD GLQFGTYTQD DVDVLRAIAE EPGVIDLFLT NEWPTGVTNR AATPDIPPGV 180 SDPFGSDSTV SELVVEIKPR YHIAGTKGVF YAREPYSNVD AVHVTRFLGL GSVGNKEKQK 240 FIHAISPIPS STMSAAEISM KPPNTTLSPY TLTERKAEAS DSAKRSSNSV SESQYWRYDV 300 SQKRQKYGTA DGNKLCFKFT SSGSCPRGEK CNFHHDMDAR EQSQRGVCFD FLNKGKCERG 360 PDCSFKHSLQ NEVDSQSGKR RSGNAGTNRS KECWFCLSSP NIESHLIVSV GERFYCALAK 420 GHLVPDHILI VPVEHFPNTL SLGPEFETEI NRLQNCLQKY FKSQGKEVVF FEWVSKRSTH 480 ANLQAVPIPT SRAHVVQNIF DMAAEKLGFK FVASKSADAP PGEGRKSLRT QFDSNRSFFY 540 AELPECVTLS HVIEETEIFP AQFGREVLAG LLNMADKADW RNCTHSKEEE TKMAEEFKIR 600 FENFDPNK

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MSPPRILLCG DVLGRLNQLY KRVVSVNKSA GPFDALLCVG QFFPDSTEQL DEFMDYVEGR  60
SVIPLSTYFI GDYGVGAAKV LLASSRDSGN QGFKMDGLKI CANLHWLKGS GKFTLQGLSL  120
AYLSGRRSSD GLQFGTYTQD DVDVLRAIAE EPGVIDLFLT NEWPTGVTNR AATPDIPPGV  180
SDPFGSDSTV SELVVEIKPR YHIAGTKGVF YAREPYSNVD AVHVTRFLGL GSVGNKEKQK  240
FIHAISPIPS STMSAAEISM KPPNTTLSPY TLTERKAEAS DSAKRSSNSV SESQYWRYDV  300
SQKRQKYGTA DGNKLCFKFT SSGSCPRGEK CNFHHDMDAR EQSQRGVCFD FLNKGKCERG  360
PDCSFKHSLQ NEVDSQSGKR RSGNAGTNRS KECWFCLSSP NIESHLIVSV GERFYCALAK  420
GHLVPDHILI VPVEHFPNTL SLGPEFETEI NRLQNCLQKY FKSQGKEVVF FEWVSKRSTH  480
ANLQAVPIPT SRAHVVQNIF DMAAEKLGFK FVASKSADAP PGEGRKSLRT QFDSNRSFFY  540
AELPECVTLS HVIEETEIFP AQFGREVLAG LLNMADKADW RNCTHSKEEE TKMAEEFKIR  600
FENFDPNK