PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023516971.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 528aa    MW: 57925.5 Da    PI: 5.2802
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023516971.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS415.54.8e-1271505131374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     lv+ L++cA+ ++ gd+ la +l  +++ l s       + ++a +f  AL +r++          p  +t++++  e+   ++ ++e++P+lkf
  XP_023516971.1 150 LVHMLVTCADSIHRGDFPLAGSLFVEMQSLLSGINtdCGIGKVAGHFIDALTRRVFT---------PHDPTTTSTGYENELLYHHYYEACPYLKF 235
                     689************************999554331259*****************9.........66677777899999999************ PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g +La++A++++v+f f+ ++a rled
  XP_023516971.1 236 AHFTANQAILEAFDGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLKLAELARSVNVRFAFRGVAAARLED 330
                     ***************************************************************************************9999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++++L+v+p+E++aVn+v+qlhrll ++ + +s+ + vL  ++sl+Pk+++vveqeadhn++ Flerf+eal yys++fdslea    +  e+ 
  XP_023516971.1 331 VKPWMLQVSPKETVAVNSVMQLHRLLGNNNQFSSPLEMVLGWIRSLKPKIMTVVEQEADHNQTGFLERFTEALFYYSTMFDSLEACC--KMPEK- 422
                     *************************************************************************************96..44555. PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        +++l+rei+nvv+ceg++r+erhe l kWr+rl++aGF++++l+++a kqa++ll  ++ +g++vee++g+l+lgW++rpL+++SaW+
  XP_023516971.1 423 AFAEMYLQREICNVVSCEGSARVERHEPLVKWRSRLQQAGFRALHLGSNAFKQASMLLTLFSAEGFSVEENEGCLTLGWHSRPLLAASAWQ 513
                     555667************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MDPFDSAASS GSSSGSSSST VTKPQDIDGL LAGAGYKVRS SDLHHVAQRL ERLESAMFNS  60
SSEISQLASD AVHYNPSDIA SWVDSILSEF NETASLPSDL SDFPDLFTVS NQTPGNVSWI  120
DPCVAAQHQN LAQNQLTVVT AMEEDSGIKL VHMLVTCADS IHRGDFPLAG SLFVEMQSLL  180
SGINTDCGIG KVAGHFIDAL TRRVFTPHDP TTTSTGYENE LLYHHYYEAC PYLKFAHFTA  240
NQAILEAFDG HDCVHVIDFN LMHGLQWPAL IQALALRPGG PPLLRLTGIG PPSPDGRDSL  300
REIGLKLAEL ARSVNVRFAF RGVAAARLED VKPWMLQVSP KETVAVNSVM QLHRLLGNNN  360
QFSSPLEMVL GWIRSLKPKI MTVVEQEADH NQTGFLERFT EALFYYSTMF DSLEACCKMP  420
EKAFAEMYLQ REICNVVSCE GSARVERHEP LVKWRSRLQQ AGFRALHLGS NAFKQASMLL  480
TLFSAEGFSV EENEGCLTLG WHSRPLLAAS AWQAAPPIDA THPSGETV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-129GRAS family protein