PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023516880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 301aa    MW: 32197.4 Da    PI: 9.4702
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023516880.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.2e-08102127227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ f     C++Gd+C+FaHg+
  XP_023516880.1 102 KTRLCNKFNSAEGCRFGDKCHFAHGE 127
                     8***********************96 PP

2zf-CCCH30.65.8e-10268293127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC +fa+ GtC + +rC+FaHg+
  XP_023516880.1 268 FKTKLCANFAK-GTCTFRERCHFAHGE 293
                     69*********.*************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MDIDAVRKRE RTETAFNGNG SFKKLKPEMD SLSTGLGSKS RPCTKFFSTS GCPFGEGCHF  60
AHYVPGGFKA ISQMITPALP PGNRNPVPPQ SFQDGVSPPA VKTRLCNKFN SAEGCRFGDK  120
CHFAHGEWEL GRPNPPQDHG GMGQMQQPRM GGGWNVPPPP NHGPAASFGA SATAKISVDA  180
SLAGPIIGKN GVNSKNICRM TGARLSIKEH ESDPSLKNIE LEGTFDQINL ASSMVRELIA  240
NVGAASANNA MKQHHSATQQ SSGSANNFKT KLCANFAKGT CTFRERCHFA HGESELRKPG  300
M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-79C3H family protein