PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516792.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

CO-like

Protein Properties

Length: 374aa MW: 40775.9 Da PI: 6.3648

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516792.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.2	5.3e-06	21	61	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++ ++ +C+ ++ +lC +C ++H H+ XP_023516792.1 21 KPCDSCKTGPAAVYCRPDSAFLCLSCDAKIHCAnkfasrHE 61 57****99******************95545666666 PP
2	zf-B_box	27.9	4.8e-09	63	108	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ XP_023516792.1 63 VWMCEVCEQAPAVVMCKADAAALCVTCDADIHSAnplarrHERVPV 108 689*****************************66899999999986 PP
3	CCT	70.2	5.1e-24	301	344	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_023516792.1 301 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 344 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MGIQGDSVVK GFGGGWGVVA KPCDSCKTGP AAVYCRPDSA FLCLSCDAKI HCANKFASRH 60 ERVWMCEVCE QAPAVVMCKA DAAALCVTCD ADIHSANPLA RRHERVPVEP FFDTAESMVK 120 SSSGFNFLLP TETNASGCHG AHQHEEVEVA SWLLSNPPFN SKLVDEPEIK PPGHDQMFFT 180 EMDSFIDFDY PNPVNNHSAV NDSVVPVQTK PLCTPVINTH SQENCYDIDF CRSKLNSFGH 240 QPLSLSHSVS SSSLEVGVVP EANSMSDISY PLGQSVSSGG DSGLPVSGSG NPATQLCGID 300 REARVLRYRE KRKNRKFEKT IRYASRKAYA ETRPRIKGRF AKRTDTLSEV EEMYGSAGSS 360 LFLADTQYGV VPTF

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MGIQGDSVVK GFGGGWGVVA KPCDSCKTGP AAVYCRPDSA FLCLSCDAKI HCANKFASRH  60
ERVWMCEVCE QAPAVVMCKA DAAALCVTCD ADIHSANPLA RRHERVPVEP FFDTAESMVK  120
SSSGFNFLLP TETNASGCHG AHQHEEVEVA SWLLSNPPFN SKLVDEPEIK PPGHDQMFFT  180
EMDSFIDFDY PNPVNNHSAV NDSVVPVQTK PLCTPVINTH SQENCYDIDF CRSKLNSFGH  240
QPLSLSHSVS SSSLEVGVVP EANSMSDISY PLGQSVSSGG DSGLPVSGSG NPATQLCGID  300
REARVLRYRE KRKNRKFEKT IRYASRKAYA ETRPRIKGRF AKRTDTLSEV EEMYGSAGSS  360
LFLADTQYGV VPTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-107	CO-like family protein