PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023516720.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 287aa    MW: 31004.2 Da    PI: 6.9557
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023516720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-091256446
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     W+ + d+ + +a + ++ +   +W++Ia+ +  gRt +++k+++  
   XP_023516720.1 12 WSRDQDKAFENALATYPEDaadRWEKIAADIA-GRTVEEIKDHYKV 56
                     ********************************.***********86 PP
2Myb_DNA-binding42.61.4e-13118162347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_023516720.1 118 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 162
                      7*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MTVDEKSKSS IWSRDQDKAF ENALATYPED AADRWEKIAA DIAGRTVEEI KDHYKVLVDD  60
VNQIESGLVP LPCYSFCSDG SPSDDTKKKG DHHGVDNSEP CSGNKAPRSD QERRKGTAWT  120
EDEHRLFLLG LDKYGKGDWR SISRNFVVTR TPTQVASHAQ KYFIRLNSMN KDRRRSSIHD  180
ITRVDNGDVS AHQGPITGEA NSSGGGGGGG GSTSNSSKQP SQPPTGSFDV GIYSALAVEQ  240
PVGGPFGPAV ATPVSTPPAA HTTYAVRSRV VNSLVPRPPV NMSSITY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-92MYB family protein