PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516705.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NF-YC

Protein Properties

Length: 251aa MW: 28032.5 Da PI: 6.5834

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	176.5	2.6e-55	73	176	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie++ dfknh+lPlarikki+kadedv+misaeaPvl+++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_023516705.1 73 QLQAFWSNQyqeIERVIDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 167 89****99999****************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l XP_023516705.1 168 VDIVPREDL 176 ****987 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MDQHGHCQSP SMGAVGSGGQ IAYGSSMYHP SQMTVGPTSG AQSTSQPSGA QLAQHQLAYQ 60 HIHQQQQQQL QQQLQAFWSN QYQEIERVID FKNHSLPLAR IKKIMKADED VRMISAEAPV 120 LFARACEMFI LELTLRSWNH TEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPREDLKDEA 180 LTSIPRGSIT VGGPGDALPY YMSSQHASQV GTPGMIMGKP VMDPGSYTQQ SHPYMPPQMW 240 QHGQDRTPTD Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	152	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	3e-79	NF-YC family protein