PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516495.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

RAV

Protein Properties

Length: 353aa MW: 40027.6 Da PI: 8.4554

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516495.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32	3.2e-10	40	87	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s++kGV +g W A+I+ + r++lg+f +++eAa a++ a+ +++ XP_023516495.1 40 SKFKGVVLQQ-NGHWGAQIYA------NhHRIWLGTFKSEDEAAMAYDSAAIRIR 87 79**9887.8**999......44******99********9987 PP
2	B3	87.3	1.3e-27	162	270	1	96
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ltpsdv+k++rlv+pkk+a ++ + ++++l++ d+ r+W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++ F XP_023516495.1 162 FQKELTPSDVGKLNRLVIPKKYAVKYfphipastvdnvkRVDDDCDMQLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAF 256 99***********************9999988866663333499*********************************************** PP EE-SSSEE..EEEE CS B3 83 kldgrsefelvvkv 96 +l + +++ ++ v XP_023516495.1 257 YLCEAAKASATFCV 270 *9876666666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MKQELSSIIL KARTNAIGED CITCPFPAGG CSRQGRSLTS KFKGVVLQQN GHWGAQIYAN 60 HHRIWLGTFK SEDEAAMAYD SAAIRIRSGD CHRNFPWTKF TIEEPNFQNL YTTEALLSML 120 KDGSYRTKFA EYLSDCLVSA QTASPSAEKL HDNGRTSIKQ LFQKELTPSD VGKLNRLVIP 180 KKYAVKYFPH IPASTVDNVK RVDDDCDMQL VFFDKMMRQW KFRYCYWKSS QSYVFTRGWN 240 RFVKEKQLKA NDTIAFYLCE AAKASATFCV VDVKNCNNYG SLTENEITSS EMQLDLSREE 300 VNGPVSPKHV DDELKDDLEV SGFKLFGVYI KGKFAGQCFY LPRSAVAGFP GLI

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MKQELSSIIL KARTNAIGED CITCPFPAGG CSRQGRSLTS KFKGVVLQQN GHWGAQIYAN  60
HHRIWLGTFK SEDEAAMAYD SAAIRIRSGD CHRNFPWTKF TIEEPNFQNL YTTEALLSML  120
KDGSYRTKFA EYLSDCLVSA QTASPSAEKL HDNGRTSIKQ LFQKELTPSD VGKLNRLVIP  180
KKYAVKYFPH IPASTVDNVK RVDDDCDMQL VFFDKMMRQW KFRYCYWKSS QSYVFTRGWN  240
RFVKEKQLKA NDTIAFYLCE AAKASATFCV VDVKNCNNYG SLTENEITSS EMQLDLSREE  300
VNGPVSPKHV DDELKDDLEV SGFKLFGVYI KGKFAGQCFY LPRSAVAGFP GLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	1e-104	RAV family protein