PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516476.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 912aa MW: 100864 Da PI: 8.3593

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.9	1.3e-18	820	901	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+ +e + Li++r +++ r++ +k +++lWee+s m g++rsp qCk+ w +l ++y+ k + ++++pyf++++a XP_023516476.1 820 KWKPEEMKRLIKLRGQLHARFQVSKGRMALWEEISTCMLGDGMNRSPGQCKSLWASLVQKYEDSKSEKTI-----KKSWPYFEEMDA 901 7**********************************************************999887775.....356*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 912 aa Download sequence
MQLEFLGGSS VLSSPHSAPY KQRMASFGAL SLCPCSPLSR PHQTVRTIYC CRGSPTVLGK 60 NVSKEHRKRP GRLEGAKRSM EDSVQRKMEQ FYEGSDGPPL RVLPIGGLGE IGMNCMLVGN 120 YDRYILIDAG VMFPDHDELG VQKIIPDTTF IRRWSHKIEA VVITHGHEDH IGALPWVIPA 180 LDSHTPIFAS SFTVELIKKR LKENGIFIPS RLKVFKMKRR FTAGPFEIEP IRVTHSIPDC 240 CGLVLRCADG TIFHTGDWKI DESPLDGKVF DRETLEQLSK EGVTLMMSDS TNVLSPGRTI 300 SESVVADALL RRISAAKGRV ITTQFASNIH RLGSVKAAAD LTGRKLVFVG MSLRTYLDAA 360 WKDGKAPIDP STLVKVEDID AYAPKDLLIV TTGSQAEPRA ALNLASYGSS HSLKLSKEDM 420 ILYSAKVIPG NESRVMKMLN RISEIGSNII MGKNELLHTS GHGYRGELEE VLQIVKPQHF 480 LPIHGELLFL KEHELLGRST GIRHTTVIKN GEMLGVSHLR NRRVLSNGFT SLGMENLQLK 540 YSDGDKAFGS SSELFVDERL KIATDGIIVV SMEILRPQSV DGLNETGIRG KLRITTRCLW 600 LDKGKLLDAL HKAAHAALSS CPVNCPLAHM ERTVSELLRK MVRKYSGKRP EVIVMAVENP 660 GGVLSEQLGR RLSGKSDTRF GMSALRKAVD GQPTKSHLNG IRPDGNDDLH SEDNSSQESQ 720 GYYIEPGSLL PEEDYNSSNS NLTETESSGN EGLEDFWRPF ITPSSPVNEL VKEDEGSVQP 780 SKNTLEISNG GEEGSDEGSL KTSNSSEKPL KPLKPVKSNK WKPEEMKRLI KLRGQLHARF 840 QVSKGRMALW EEISTCMLGD GMNRSPGQCK SLWASLVQKY EDSKSEKTIK KSWPYFEEMD 900 AILSDSEAVA SK

Sequence ? help Back to Top

Protein Sequence Length: 912 aa Download sequence

MQLEFLGGSS VLSSPHSAPY KQRMASFGAL SLCPCSPLSR PHQTVRTIYC CRGSPTVLGK  60
NVSKEHRKRP GRLEGAKRSM EDSVQRKMEQ FYEGSDGPPL RVLPIGGLGE IGMNCMLVGN  120
YDRYILIDAG VMFPDHDELG VQKIIPDTTF IRRWSHKIEA VVITHGHEDH IGALPWVIPA  180
LDSHTPIFAS SFTVELIKKR LKENGIFIPS RLKVFKMKRR FTAGPFEIEP IRVTHSIPDC  240
CGLVLRCADG TIFHTGDWKI DESPLDGKVF DRETLEQLSK EGVTLMMSDS TNVLSPGRTI  300
SESVVADALL RRISAAKGRV ITTQFASNIH RLGSVKAAAD LTGRKLVFVG MSLRTYLDAA  360
WKDGKAPIDP STLVKVEDID AYAPKDLLIV TTGSQAEPRA ALNLASYGSS HSLKLSKEDM  420
ILYSAKVIPG NESRVMKMLN RISEIGSNII MGKNELLHTS GHGYRGELEE VLQIVKPQHF  480
LPIHGELLFL KEHELLGRST GIRHTTVIKN GEMLGVSHLR NRRVLSNGFT SLGMENLQLK  540
YSDGDKAFGS SSELFVDERL KIATDGIIVV SMEILRPQSV DGLNETGIRG KLRITTRCLW  600
LDKGKLLDAL HKAAHAALSS CPVNCPLAHM ERTVSELLRK MVRKYSGKRP EVIVMAVENP  660
GGVLSEQLGR RLSGKSDTRF GMSALRKAVD GQPTKSHLNG IRPDGNDDLH SEDNSSQESQ  720
GYYIEPGSLL PEEDYNSSNS NLTETESSGN EGLEDFWRPF ITPSSPVNEL VKEDEGSVQP  780
SKNTLEISNG GEEGSDEGSL KTSNSSEKPL KPLKPVKSNK WKPEEMKRLI KLRGQLHARF  840
QVSKGRMALW EEISTCMLGD GMNRSPGQCK SLWASLVQKY EDSKSEKTIK KSWPYFEEMD  900
AILSDSEAVA SK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein