PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516380.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 542aa MW: 60498.8 Da PI: 6.7203

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.6e-13	366	411	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+++N++f+ L++llP+ +K +K ++L+ + eY++sL XP_023516380.1 366 HHVISERRRREKLNDSFQALKSLLPPG-----TKKDKGSVLTTTREYMSSL 411 58899******************97.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MEIAFHLHES HRHSFLQTLM HSFGCTYICL WSYLPQPSNC LRFLDGLCVQ EIEVQTCSSS 60 AGSLAQLLFE EYRQLEFSVE DGLVPGLAHK HNDPCLKLED SQLQTYASAD IQRQFYLAAR 120 IQASIFLGSI NGEIELGFSN VSQVDMQMII NNLLPGDVVG PKIPLELPQP ATKLKLIPSP 180 SLSPIPNPNP NPNPNQLSSS TSSLRSQSMD SPAECSSLLL NAIQTTPHIT EPFTADIPIL 240 PSQHQHSMDS IFAQARNLQF PTPEALDEAM TRTILAVLSS PAGSSSSSMH KTLEGMITPS 300 YHLNVKASAF KKYARVLTPT TARLNQNMST RQSLLKRSLA FMRNLNLMRL RERMPTTSRP 360 TSSQLHHVIS ERRRREKLND SFQALKSLLP PGTKKDKGSV LTTTREYMSS LKAQVAELSR 420 RNQQLEAQLL QSAKEEETSV FPQEERFRVG ISQVSESTSE GQIIDLHITT RGESPLTDMV 480 IGVLEFLKPL NNVRVVSMEG NTQLTPSSST NHLNLRLIIE ENEWDESAFR EAVERVVSDL 540 AR

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MEIAFHLHES HRHSFLQTLM HSFGCTYICL WSYLPQPSNC LRFLDGLCVQ EIEVQTCSSS  60
AGSLAQLLFE EYRQLEFSVE DGLVPGLAHK HNDPCLKLED SQLQTYASAD IQRQFYLAAR  120
IQASIFLGSI NGEIELGFSN VSQVDMQMII NNLLPGDVVG PKIPLELPQP ATKLKLIPSP  180
SLSPIPNPNP NPNPNQLSSS TSSLRSQSMD SPAECSSLLL NAIQTTPHIT EPFTADIPIL  240
PSQHQHSMDS IFAQARNLQF PTPEALDEAM TRTILAVLSS PAGSSSSSMH KTLEGMITPS  300
YHLNVKASAF KKYARVLTPT TARLNQNMST RQSLLKRSLA FMRNLNLMRL RERMPTTSRP  360
TSSQLHHVIS ERRRREKLND SFQALKSLLP PGTKKDKGSV LTTTREYMSS LKAQVAELSR  420
RNQQLEAQLL QSAKEEETSV FPQEERFRVG ISQVSESTSE GQIIDLHITT RGESPLTDMV  480
IGVLEFLKPL NNVRVVSMEG NTQLTPSSST NHLNLRLIIE ENEWDESAFR EAVERVVSDL  540
AR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	371	376	ERRRRE
2	372	377	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	3e-53	bHLH family protein