PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516297.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 744aa MW: 81908.6 Da PI: 5.626

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516297.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.3	5.8e-32	259	315	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers d++++ei+Y+g H h XP_023516297.1 259 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSL-DGQITEIIYKGAHIHA 315 7**************************************.************97 PP
2	WRKY	103	1.7e-32	484	541	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+vkg+++prsYY+CtsagC v+k+ver+++d k+v++tYeg+Hnhe XP_023516297.1 484 EDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCAVRKHVERASHDLKCVITTYEGKHNHE 541 8********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence
MRFMDDNGEN SRSPTSSSPK FSDDEVLVDA NAGSLRASKR GRNGFNVSKN NLALPRFRTA 60 TPLGSPMVRS PCLTIPPGIS PTLLLDSPIT LLNTQDLPSP TTGTFPIHQI KDEHSLLNPV 120 MPEDGSSHGS EDSCFRFAPH GELNTLQSLF RLENQEADID RQAFESEKAL MDFEFLTDFS 180 KEGSVLKYDI ASSTGNNHFD GKSVNGNCDN MESCLSAIAN NQPSTPEESA KRDDSETQHP 240 LEGEQKGSCI PMGMLRTSED GYNWRKYGQK QVKGSEYPRS YYKCTHPNCQ VKKKVERSLD 300 GQITEIIYKG AHIHAKPDPN RRAMLGSMLM PDDTPEIGEG GGNRAKVEAG LTWRNTQYGV 360 KDTKPISDWS VDGLERTSSI SVVTELSDPL LNPQGKNVGV FESVGTPELS STLASHDDDG 420 GGGGDDDDLT TQGSISVCIE ADDAEPELKR RRKEGGSIET NLASRSLREP RVVVQIETDV 480 DILEDGYRWR KYGQKVVKGN PNPRSYYKCT SAGCAVRKHV ERASHDLKCV ITTYEGKHNH 540 EVPAARNGSQ VNSSNGNSQP STSHVQPNMD LSRNSNVANS ETQIQDLAAQ FYPKPEFNYD 600 YQRSGCFDTF RNDIKLGAPS FCQMKFPQLR HTLPYSSFAL NSKHTSTSIS GSLASVVPDF 660 PISLPLNQNF SAAGFDFTNG RPIPPFQVFL SGQQLRETDR FLTPKQEHDD DNIRASFQPI 720 VDSSSASSSS LVSSVYQHMM GNFP

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence

MRFMDDNGEN SRSPTSSSPK FSDDEVLVDA NAGSLRASKR GRNGFNVSKN NLALPRFRTA  60
TPLGSPMVRS PCLTIPPGIS PTLLLDSPIT LLNTQDLPSP TTGTFPIHQI KDEHSLLNPV  120
MPEDGSSHGS EDSCFRFAPH GELNTLQSLF RLENQEADID RQAFESEKAL MDFEFLTDFS  180
KEGSVLKYDI ASSTGNNHFD GKSVNGNCDN MESCLSAIAN NQPSTPEESA KRDDSETQHP  240
LEGEQKGSCI PMGMLRTSED GYNWRKYGQK QVKGSEYPRS YYKCTHPNCQ VKKKVERSLD  300
GQITEIIYKG AHIHAKPDPN RRAMLGSMLM PDDTPEIGEG GGNRAKVEAG LTWRNTQYGV  360
KDTKPISDWS VDGLERTSSI SVVTELSDPL LNPQGKNVGV FESVGTPELS STLASHDDDG  420
GGGGDDDDLT TQGSISVCIE ADDAEPELKR RRKEGGSIET NLASRSLREP RVVVQIETDV  480
DILEDGYRWR KYGQKVVKGN PNPRSYYKCT SAGCAVRKHV ERASHDLKCV ITTYEGKHNH  540
EVPAARNGSQ VNSSNGNSQP STSHVQPNMD LSRNSNVANS ETQIQDLAAQ FYPKPEFNYD  600
YQRSGCFDTF RNDIKLGAPS FCQMKFPQLR HTLPYSSFAL NSKHTSTSIS GSLASVVPDF  660
PISLPLNQNF SAAGFDFTNG RPIPPFQVFL SGQQLRETDR FLTPKQEHDD DNIRASFQPI  720
VDSSSASSSS LVSSVYQHMM GNFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	5e-94	WRKY family protein