PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516216.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HRT-like

Protein Properties

Length: 468aa MW: 52427.6 Da PI: 9.9446

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516216.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	50.3	4.1e-16	268	297	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv ++ G vC+++Pv+gRKRC+eHKGm++ XP_023516216.1 268 CGVVIGYGVVCRKPPVEGRKRCAEHKGMKV 297 ****************************97 PP
2	HRT-like	63.7	2.5e-20	342	372	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l dGs+C+r+Pv+gRKRCeeHKG+Ri XP_023516216.1 342 ICGVVLYDGSPCRRTPVQGRKRCEEHKGQRI 372 8*****************************7 PP
3	HRT-like	53.4	4.3e-17	431	460	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv l++G C+rqPvkgR RC eHKGmRi XP_023516216.1 431 CGVDLGNGLYCTRQPVKGRVRCGEHKGMRI 460 *****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MVAEFSSTRL KREDCKRTKH DSSFSKWEIL VAPSDWEDYS SGKEGAERYR IHNLPKVSGP 60 GLYELGLAVS SSGLGREIAK LDADWIVVVY LGEADNVRTR LQHYGRSGSH LGNGYLCFVD 120 CKVVPLEKGP GLFQEMFTRG YSIVYRWAPM KNKRDAQMTE AQLLKTFDYA WNTSGNGARR 180 HNDVLKKLED IASQTKKFTI IARKLLPFRQ KQMGIKIKTS KPIPTENKPG EYGEERSSFF 240 SRILHFSRSR PRLVVNTDDV SGADSNSCGV VIGYGVVCRK PPVEGRKRCA EHKGMKVNGL 300 LKNSSTIYGD TDFSGSNAET SYNTEELSVQ DSFPNKGNFL PICGVVLYDG SPCRRTPVQG 360 RKRCEEHKGQ RIRRSTLISS QEAKPKVDLP SQDNLASLKY KQQTSPTSTQ ESILIAQDNS 420 PDLNSSLERK CGVDLGNGLY CTRQPVKGRV RCGEHKGMRI KGLISRKH

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MVAEFSSTRL KREDCKRTKH DSSFSKWEIL VAPSDWEDYS SGKEGAERYR IHNLPKVSGP  60
GLYELGLAVS SSGLGREIAK LDADWIVVVY LGEADNVRTR LQHYGRSGSH LGNGYLCFVD  120
CKVVPLEKGP GLFQEMFTRG YSIVYRWAPM KNKRDAQMTE AQLLKTFDYA WNTSGNGARR  180
HNDVLKKLED IASQTKKFTI IARKLLPFRQ KQMGIKIKTS KPIPTENKPG EYGEERSSFF  240
SRILHFSRSR PRLVVNTDDV SGADSNSCGV VIGYGVVCRK PPVEGRKRCA EHKGMKVNGL  300
LKNSSTIYGD TDFSGSNAET SYNTEELSVQ DSFPNKGNFL PICGVVLYDG SPCRRTPVQG  360
RKRCEEHKGQ RIRRSTLISS QEAKPKVDLP SQDNLASLKY KQQTSPTSTQ ESILIAQDNS  420
PDLNSSLERK CGVDLGNGLY CTRQPVKGRV RCGEHKGMRI KGLISRKH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-113	HRT-like family protein