PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516139.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GRF

Protein Properties

Length: 354aa MW: 39970.9 Da PI: 9.1219

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516139.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.6	1.2e-24	100	143	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk+++ XP_023516139.1 100 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVD 143 79***************************************986 PP
2	QLQ	57.5	4.2e-20	8	43	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT aQ+q+L++Q+l++Ky+++++P+Pp+Ll+ i++ XP_023516139.1 8 PFTSAQWQELENQALVFKYMVSGVPIPPDLLFSIKR 43 8*******************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MSARSMFPFT SAQWQELENQ ALVFKYMVSG VPIPPDLLFS IKRSTLESPF TSKLFPHHSQ 60 QGISTSLSLS LLLSLSLSEM FVFHAVGWNC LQMSLGRKID PEPGRCRRTD GKKWRCSKEA 120 YPDSKYCERH MHRGKNRSRK PVDVLKTTAT NELNHLSNQA FSSLNKNSSL HSYRPFPAPQ 180 MSSNPNGNGI STKDTNTLLL LDPGSYSDRS PDYRYTYGLK EEVDEHVFFS QEPSEATARA 240 DFSASSTVDS LQLTPLTMSC SSLYPKQNNF SSLQSGQSCY PLHQSLTDPL KQQKREESQK 300 KVHRFFDEWP QKEGGSWLDF NDKSSNIGSV STTRLSISIP TASNELPIFR SKNP

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MSARSMFPFT SAQWQELENQ ALVFKYMVSG VPIPPDLLFS IKRSTLESPF TSKLFPHHSQ  60
QGISTSLSLS LLLSLSLSEM FVFHAVGWNC LQMSLGRKID PEPGRCRRTD GKKWRCSKEA  120
YPDSKYCERH MHRGKNRSRK PVDVLKTTAT NELNHLSNQA FSSLNKNSSL HSYRPFPAPQ  180
MSSNPNGNGI STKDTNTLLL LDPGSYSDRS PDYRYTYGLK EEVDEHVFFS QEPSEATARA  240
DFSASSTVDS LQLTPLTMSC SSLYPKQNNF SSLQSGQSCY PLHQSLTDPL KQQKREESQK  300
KVHRFFDEWP QKEGGSWLDF NDKSSNIGSV STTRLSISIP TASNELPIFR SKNP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-52	GRF family protein