PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516130.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

CO-like

Protein Properties

Length: 362aa MW: 42089.9 Da PI: 6.2081

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516130.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.3	6.7e-08	25	67	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +r+C+ + k++++fC ++ +lC+ C ++ H+ H++ XP_023516130.1 25 ARVCDACLCKRAHWFCAADDAFLCQACDVSVHSAnqlarrHDR 67 689*****************************65677777776 PP
2	CCT	67.8	3e-23	314	357	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk++ XP_023516130.1 314 REARVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRMKGRFVKRT 357 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MLRSERKAAA EAAAAAAAMM GGRTARVCDA CLCKRAHWFC AADDAFLCQA CDVSVHSANQ 60 LARRHDRIRL ETSSLKSIHQ GQAQSQSQPH LPPWLKGFTR KARTPRPNKP ISSTKASVFS 120 LVPEISTDEG FSIDDNEDEH RQFHHHHHHH HQQVPVFDPL FDDEKFSLTH ELDDFGDGFL 180 PSEVDLAEFV ANVENLLVGQ EQEQEQEYDR TTMLKVKDEK EEEEEELVQD WNFKGEEIEE 240 EEINKVEDEV KKKIKKKNIF LRLNYDAIIT AWDTQSSPYT TGDRPEFELD DCWEEEWGLH 300 ENGERGGWRN DGEREARVSR YREKRRTRLF SKKIRYQVRK LNAEKRPRMK GRFVKRTATP 360 SC

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MLRSERKAAA EAAAAAAAMM GGRTARVCDA CLCKRAHWFC AADDAFLCQA CDVSVHSANQ  60
LARRHDRIRL ETSSLKSIHQ GQAQSQSQPH LPPWLKGFTR KARTPRPNKP ISSTKASVFS  120
LVPEISTDEG FSIDDNEDEH RQFHHHHHHH HQQVPVFDPL FDDEKFSLTH ELDDFGDGFL  180
PSEVDLAEFV ANVENLLVGQ EQEQEQEYDR TTMLKVKDEK EEEEEELVQD WNFKGEEIEE  240
EEINKVEDEV KKKIKKKNIF LRLNYDAIIT AWDTQSSPYT TGDRPEFELD DCWEEEWGLH  300
ENGERGGWRN DGEREARVSR YREKRRTRLF SKKIRYQVRK LNAEKRPRMK GRFVKRTATP  360
SC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	325	341	RRTRLFSKKIRYQVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49130.2	8e-41	CO-like family protein