PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023515985.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 313aa MW: 34431.1 Da PI: 8.3619

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023515985.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.2	1e-11	54	80	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_023515985.1 54 PGEPDCSYYIRTGLCRFGATCRFNHPP 80 5789*********************97 PP
2	zf-CCCH	39.4	9.9e-13	101	125	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_023515985.1 101 QPECQYYLKTGTCKFGATCKFHHPR 125 799********************96 PP
3	zf-CCCH	35.4	1.8e-11	147	171	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++ rtG+Ck+G++CkF+H++ XP_023515985.1 147 EPECAYYIRTGQCKFGNTCKFHHPQ 171 799********************97 PP
4	zf-CCCH	38.5	2e-12	265	291	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_023515985.1 265 PGQPECQFYMKTGDCKFGAVCRFHHPR 291 5789*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MEYDSGIPMS VTEGHSSALT PSLREGSLAN FDALWQMNLG SGEIMGSGSY PVRPGEPDCS 60 YYIRTGLCRF GATCRFNHPP NRELAIATAR MKGEFPERIG QPECQYYLKT GTCKFGATCK 120 FHHPRDKAGI AGRVALNIIG YPLRPSEPEC AYYIRTGQCK FGNTCKFHHP QPTNMMVSLR 180 GSPIYPTVQS PTPGQQSYPG GSTNWSRASF IPSPRWEGPS SYASLILPQG VLSVPGWNAF 240 NDQLGSVSSS ESPQQTRENV FPERPGQPEC QFYMKTGDCK FGAVCRFHHP RERVLPAPDC 300 VLSPIGLPLR PVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-150	C3H family protein