PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023515735.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 999aa    MW: 113203 Da    PI: 6.4259
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023515735.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-08382427146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r++WTt Ed+ l+  ++q G ++W   a  +g++Rt+ qc sr+q 
   XP_023515735.1 382 RNPWTTSEDKNLLFTIQQKGLNNWIELAVSLGTNRTPFQCLSRYQR 427
                      79******************************************96 PP
2Myb_DNA-binding44.73.2e-14435479146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +  WT++Ed++l  av+ +G g+W ++a+t+  gRt+ qc +rw k
   XP_023515735.1 435 KSEWTKDEDDKLRSAVAVFGEGDWQAVASTLE-GRTGPQCSNRWKK 479
                      578*****************************.***********98 PP
3Myb_DNA-binding34.93.6e-11488533147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +T++Ed +l+ av ++G+++W++ a+ ++ gR   qc++rw++ 
   XP_023515735.1 488 RGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLP-GRNQVQCRERWFNC 533
                      799*****************************.***********996 PP
4Myb_DNA-binding48.71.7e-15540584147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r  WT+eEd++l  a++++G   W+++a++++  Rt+++c+ rw k+
   XP_023515735.1 540 RCEWTEEEDLRLEIAIQEHGYS-WAKVAACVP-SRTDNECRRRWKKL 584
                      568*****************99.*********.***********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 999 aa     Download sequence    
MSRRSHFDGG DKELPASEED DEDDLVDDDM ETLRRACRLA GVNHEDYINP RLSLPAAGDA  60
NLGSDSDDVD DLELLRNIQN RFSIAADEQP LSILPPVTAD EEEDDFEMLR SIQRRFAAYE  120
SDILSNKPDQ SCDLDGPLKM DSENTDVERL TSSERSSMIA FEKGSLPKAA LAFIDAIKKN  180
RSQQKFIRSK MIHLEARIEE NKKLRKRFKV LKGFQGSCRR KTTCALTQMV DPRVQLISAG  240
KPQAKDSSKK DKRLSSMCYG PAENSHVACY RTAWTKFHPV DRKRWSNFER ENLGKGIRQQ  300
FQEMVLQISV DQISEIQGFS AESDDLDNIL ASIKGLDITP EKIREFLPKV NWDKLASMYL  360
RGRSGAECEA RWLNFEDPLI NRNPWTTSED KNLLFTIQQK GLNNWIELAV SLGTNRTPFQ  420
CLSRYQRSLN ASILKSEWTK DEDDKLRSAV AVFGEGDWQA VASTLEGRTG PQCSNRWKKS  480
LDPARTKRGY FTPDEDSRLK IAVLLFGPKN WNKKAEFLPG RNQVQCRERW FNCLDPSLRR  540
CEWTEEEDLR LEIAIQEHGY SWAKVAACVP SRTDNECRRR WKKLFPNQVP LLQEARKIQK  600
VALISNFVDR ESERPALGPT DFRPVPNSHL LCNTDDPETA PKRNVRTRRM PVSRNEKSAN  660
GDAPKRRKSN NQRNRADETA QVDFGNNTSS VPEVKSTKPQ RKRTRHGAYT TRRKGAPKIG  720
CNSERCAEQN SDTRSVEVQL NCKEPAERIN SDCPETVDEN GMEVFENKAA EMHSEGVVCF  780
SEQEENQNST GSSGVSVLSE MTNDMDEYNP STLPDTTLLA SITADDIIET KGVNVADKDL  840
DDSNSFSLPQ SCLELRTTDS EGVDSYSVDE FTDKSHGVCK PQGRRKKNSK RSNKSQDSLV  900
SCQQAELEMS GTNELHRCNQ SKKRKHSGTN TSPLGTMEAV EEVDDCTLQG FLQKRLKRTT  960
TTHDKKVDGS SSTPPEVDND DNDPTLALLL NDKLKRKKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1884925RRKKNSKRSNKSQDSLVSCQQAELEMSGTNELHRCNQSKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0MYB family protein