PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023515544.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 473aa    MW: 53285.4 Da    PI: 5.7687
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023515544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS463.61.2e-141464601374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v+ g+l  a+ +L ++s+las dgd+mqR+aayf+eALa r+++++++lyka+++++ +   +see+ + klf+e++P+lk+++
  XP_023515544.1  46 LIHLLLTCANHVAVGSLDSANLALDHISHLASADGDTMQRIAAYFAEALADRILKTWPGLYKAFNSTKIP--MVSEEILVKKLFFEMFPFLKVAF 138
                     689*************************************************************999998..69********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI+ea+ege+++HiiD++ ++ +QW+aL+q L++Rpegpp+lRiTgv++    +ke l +++ rL+++Ae+l++pf+fn  v +rledl+
  XP_023515544.1 139 VLTNQAIVEAMEGEKMIHIIDLNGNETAQWLALMQVLSARPEGPPHLRITGVHP----QKEILDQMAPRLTEVAEQLDIPFQFNS-VISRLEDLD 228
                     ******************************************************....9**************************.79******* PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll................................................desvsleserdevLklvkslsPk 237
                     +e+Lrvk+gEala+n+vlqlh+ll                                                + s++ + +++++L+ ++sl Pk
  XP_023515544.1 229 IEKLRVKTGEALAINSVLQLHTLLgsdevlqkpsssaksanvvqysryslselldkdlvngsspspdsvsssALSQANATKINRFLDGLWSLTPK 323
                     ********************************************************************9977333333346799*********** PP

            GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                     v+vv+eq+++hn+++++er+leal++y+a+fd+le++++r+s+er k+E++l+g+ei+n++aceg er+erhe+  kW +r++ aGF+ v+ls++
  XP_023515544.1 324 VMVVTEQDCNHNGSTLMERLLEALHTYAAIFDCLESNMSRTSQERLKLEKMLFGEEIKNIIACEGIERKERHEKHDKWCQRFDIAGFRHVSLSYY 418
                     *********************************************************************************************** PP

            GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      + qa++ll+ ++ dgyr++ee+g+++++W+drpL++vSaWr
  XP_023515544.1 419 GMLQAQSLLQGYGCDGYRMKEENGCVMICWQDRPLFTVSAWR 460
                     *****************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    
MIQDEGISTI TSTPLQFFTM MPLSPKLGSP YLWLRELKSE ERGLYLIHLL LTCANHVAVG  60
SLDSANLALD HISHLASADG DTMQRIAAYF AEALADRILK TWPGLYKAFN STKIPMVSEE  120
ILVKKLFFEM FPFLKVAFVL TNQAIVEAME GEKMIHIIDL NGNETAQWLA LMQVLSARPE  180
GPPHLRITGV HPQKEILDQM APRLTEVAEQ LDIPFQFNSV ISRLEDLDIE KLRVKTGEAL  240
AINSVLQLHT LLGSDEVLQK PSSSAKSANV VQYSRYSLSE LLDKDLVNGS SPSPDSVSSS  300
ALSQANATKI NRFLDGLWSL TPKVMVVTEQ DCNHNGSTLM ERLLEALHTY AAIFDCLESN  360
MSRTSQERLK LEKMLFGEEI KNIIACEGIE RKERHEKHDK WCQRFDIAGF RHVSLSYYGM  420
LQAQSLLQGY GCDGYRMKEE NGCVMICWQD RPLFTVSAWR CCNRMNIETA FSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein