PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023515298.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 486aa MW: 53294.3 Da PI: 8.2276

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023515298.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.5	5.6e-33	204	260	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkg efprsYY+Ct+++Cpv+kkvers +++v+ei+Y+geHnh+ XP_023515298.1 204 DDGYNWRKYGQKQVKGGEFPRSYYKCTHPNCPVRKKVERSL-EGQVTEIIYKGEHNHK 260 8**************************************.*************8 PP
2	WRKY	106	1.9e-33	378	436	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+ XP_023515298.1 378 LDDGYRWRKYGQKIVKGNPYPRSYYKCTTSGCNVRKHVERASTDPKAVITTYEGKHNHD 436 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MGDDEEEPPP SSPQPPSKLK LRPLRPTINL PPRTSMESLF SGGPGLGFGF SPGPMTLVSS 60 FFSDPDDCKS FSQLLAGAMT SPVAAPPLES EFKGPPGLLD SPGLLSPSQG PFGMTHQQAL 120 AQVTMQAAEA YSHKQIQAAS LSPSVAPFAS SLELSTTFLG EKTKDHPMQP PFPNAGVASK 180 EVLDISQSEQ RVQSSLCTVG RPADDGYNWR KYGQKQVKGG EFPRSYYKCT HPNCPVRKKV 240 ERSLEGQVTE IIYKGEHNHK QPQPNKRGKD VVNSNGCSST HGNPELCSQV QRKLNELKDV 300 SFIKNDQESS HVTHEQLSGT SDGEGGSEIE TGVNRKDDDE PDAKRRNTEV RLSEPASSHR 360 TLAESRIIVQ TTSEVDLLDD GYRWRKYGQK IVKGNPYPRS YYKCTTSGCN VRKHVERAST 420 DPKAVITTYE GKHNHDVPAG KISSHRSVNS NVPQLKSHNI SNKNNDHGNS RHQHAGVLRL 480 KEEQIT

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MGDDEEEPPP SSPQPPSKLK LRPLRPTINL PPRTSMESLF SGGPGLGFGF SPGPMTLVSS  60
FFSDPDDCKS FSQLLAGAMT SPVAAPPLES EFKGPPGLLD SPGLLSPSQG PFGMTHQQAL  120
AQVTMQAAEA YSHKQIQAAS LSPSVAPFAS SLELSTTFLG EKTKDHPMQP PFPNAGVASK  180
EVLDISQSEQ RVQSSLCTVG RPADDGYNWR KYGQKQVKGG EFPRSYYKCT HPNCPVRKKV  240
ERSLEGQVTE IIYKGEHNHK QPQPNKRGKD VVNSNGCSST HGNPELCSQV QRKLNELKDV  300
SFIKNDQESS HVTHEQLSGT SDGEGGSEIE TGVNRKDDDE PDAKRRNTEV RLSEPASSHR  360
TLAESRIIVQ TTSEVDLLDD GYRWRKYGQK IVKGNPYPRS YYKCTTSGCN VRKHVERAST  420
DPKAVITTYE GKHNHDVPAG KISSHRSVNS NVPQLKSHNI SNKNNDHGNS RHQHAGVLRL  480
KEEQIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13960.2	1e-130	WRKY family protein