PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023515101.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 280aa MW: 31244.2 Da PI: 8.0031

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023515101.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.5e-06	119	138	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k F+r nL+ H+ XP_023515101.1 119 FSCHLCSKAFNRYNNLQMHM 138 89*****************9 PP
2	zf-C2H2	14	0.00015	203	225	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k F k + ++H +++ XP_023515101.1 203 FSCRKCSKAFAVKGDWRTHEKNC 225 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MTDPNYSNFF SPNSFTFIPL PPSPPPLSPP QALPLINTLS LETTDQPSSS TTNNHENALT 60 LDFCLSCPTS DLDLSASFPP DPTGKTHHDD LSPLPSPISG KGQFWIPTPS QILFGPSQFS 120 CHLCSKAFNR YNNLQMHMWG HGSQYRKGPE SLKGTQPTAM LRLPCYCCAP GCKHNIDNPT 180 SRPLKDFRTL QTHYKRKHGI KPFSCRKCSK AFAVKGDWRT HEKNCGKIWY CFCGSDFKHK 240 RSLKDHIKAF GQGHGSLGLD YFDDDNEPAS EVEQDGTVVH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-113	C2H2 family protein