PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023514990.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 704aa    MW: 76768.7 Da    PI: 5.9206
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023514990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS333.53.8e-1023457023374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++L+++ e++++g+  laq +Larl+++ +sp g+p+qR+a+yf+eAL++ l++ ++  +       +s+++ + ++aa+k fse+sP+l+f+++
  XP_023514990.1 345 DQLFKAIEVIETGNSVLAQGILARLNHHlSSPIGKPFQRAAFYFKEALQSLLQNPSNPSS----NVISSPYSIIFKIAAYKSFSELSPVLQFANF 435
                     79************************999************************9333333....333344559********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle. 190
                     t Nqa+lea++g +r+HiiDfdi++G+QW++L+q+La R +g+  l+iT+++s +++++ el  t+e+L++fA+ lg+ fe ++l +++l++ + 
  XP_023514990.1 436 TSNQALLEAFNGFNRLHIIDFDIGYGGQWASLMQELALR-NGSGCLKITAFASTSTHDEFELGFTQENLKNFANDLGIGFELEILNMESLNSGSw 529
                     ***************************************.5669***********9*****************************7777776642 PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +  L+v ++Ea+aVnl +   +++++ ++l+     vL++vk+l Pk+vv+v++  ++ +  F +r+++al++ys l++s++a    + ++++k+
  XP_023514990.1 530 PLPLNVTENEAIAVNLPV--GSFFNDALPLPM----VLRFVKHLCPKIVVCVNRGGNRMDVAFPQRVINALHCYSGLLESMDAV-TVNMDTQMKM 617
                     66789999********99..788989999999....*********************************************776.467899**** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Er ll++ i+++v   +a+    +e+l  Wr+ + ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W++++LvsvSaWr
  XP_023514990.1 618 ERYLLQPGIEKLVRSGEAW----KERLPPWRSLFLSSGFSPLTFSNFTESQADCLVQRTPVQGFHVEKRQSSLVLCWQRKELVSVSAWR 702
                     ******************9....999**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    
MKAMSLPLSF EDIRSNGVLN FTSLSDSPPP PPQLRRHNWS CGTDSTNLLK DICYVGAAEP  60
TSVLDTRRSP SPPTSSSTLS SSFGGGGGGN ASTDTAVVAP PSSLTQNPSP LDKCGGGGGG  120
GALGIDDWES VLPESPGHGP SVLGLIMSDV EDPSLGLNKL LQSGGGSGGG GGSHLDLDFS  180
GVDHGFVFEP NTLAGESIVD PSCNDFHNGR LFPGVFQNQN QMMEAIDEKP QIFNSPQVMM  240
NQNQTQFTQN PALFMPLPYG SPVQDHHQNH HHHNLLVPPP AKRFNSGSIG ANYQEIMNRR  300
QQQAQQVQVQ MFAQQQRASI AAAMAKQKMV DEEIANQQLQ QAISDQLFKA IEVIETGNSV  360
LAQGILARLN HHLSSPIGKP FQRAAFYFKE ALQSLLQNPS NPSSNVISSP YSIIFKIAAY  420
KSFSELSPVL QFANFTSNQA LLEAFNGFNR LHIIDFDIGY GGQWASLMQE LALRNGSGCL  480
KITAFASTST HDEFELGFTQ ENLKNFANDL GIGFELEILN MESLNSGSWP LPLNVTENEA  540
IAVNLPVGSF FNDALPLPMV LRFVKHLCPK IVVCVNRGGN RMDVAFPQRV INALHCYSGL  600
LESMDAVTVN MDTQMKMERY LLQPGIEKLV RSGEAWKERL PPWRSLFLSS GFSPLTFSNF  660
TESQADCLVQ RTPVQGFHVE KRQSSLVLCW QRKELVSVSA WRCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-143GRAS family protein