PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023514778.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 443aa MW: 48337.6 Da PI: 9.0315

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023514778.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023514778.1 66 FVCEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	11.4	0.00097	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_023514778.1 143 WKCDKCSKKYAVQSDWKAHSKIC 165 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MMKGSFLSQQ HQQQLLMDQT LSNLTNPTQF FSPPPPKRKR NLAGNPDPDA EVIALSPKTL 60 MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIKKKVYVC PEPSCVHHDP 120 SRALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTKEY KCDCGTLFSR 180 RDSFITHRAF CDALADESAR SAMTLSPLIS NYNNSQELLF KRGFGGGDNS NNDDNNLKTE 240 IPSWLQSDEI FVGSTHQTLN PNPNGLVPPC VSSPHISATA LLQKAAQMGA TMSSGSMGRT 300 HEMVHVSTGN YGDMGIRSRE GGMGVSCSSS SCCTDYGNKA AAVSAAVSAT ATPSGPTTFL 360 HDMINSLASA SHPFHQDSSA FNAAAFAAMH HHTAAGRSDG LTRDFLGLRP LSHGDILSIT 420 GFGNCIVPNS ATLQSQTQKP WQG

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MMKGSFLSQQ HQQQLLMDQT LSNLTNPTQF FSPPPPKRKR NLAGNPDPDA EVIALSPKTL  60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIKKKVYVC PEPSCVHHDP  120
SRALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTKEY KCDCGTLFSR  180
RDSFITHRAF CDALADESAR SAMTLSPLIS NYNNSQELLF KRGFGGGDNS NNDDNNLKTE  240
IPSWLQSDEI FVGSTHQTLN PNPNGLVPPC VSSPHISATA LLQKAAQMGA TMSSGSMGRT  300
HEMVHVSTGN YGDMGIRSRE GGMGVSCSSS SCCTDYGNKA AAVSAAVSAT ATPSGPTTFL  360
HDMINSLASA SHPFHQDSSA FNAAAFAAMH HHTAAGRSDG LTRDFLGLRP LSHGDILSIT  420
GFGNCIVPNS ATLQSQTQKP WQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-106	C2H2 family protein