PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023514602.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HB-other

Protein Properties

Length: 1043aa MW: 115751 Da PI: 9.2511

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023514602.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.4	7.5e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+++ g++ +qV+ +F +R + +k XP_023514602.1 69 KRPRDLLNPKAVKYMQTVFSIKDALSKKESREISALFGVKVAQVRDFFNSQRSRVRK 125 799**************************************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1043 aa Download sequence
MEVVKDDFSN LEIGTSVESF QKFLDSQNDL FRSQVDQLQR VVVTQCKLTG ANPLSQEMAA 60 GALSITIGKR PRDLLNPKAV KYMQTVFSIK DALSKKESRE ISALFGVKVA QVRDFFNSQR 120 SRVRKLVRLS RERSIQSNSC KQLEVGGIAT NNDPSMPIDA VPLNSDALVP LNSDAPIPLN 180 SEAPVPLNFA TPVPLNTIEP SNVDNGPSCS TQDSKLSDID GIDKHFVQTI FSMMQKEETF 240 SGQVKLMEWI LQIQNSSVLC WFLTKDGAII LATWLSQAAA EEQTSLLHVI LEVFCHLPLH 300 KALPMHISAI LQSVNNLRFY RTSDISNRAR FLISRWSKLL IRSQALKKPN GMKLLTNSQT 360 DMILKQSIGG ITSDESWKSN IDIPENFGNP SVNVDNMRRF SFLHYGRCID LSMLVNGVFK 420 DNFLSWLIGF RERRKVQMVE QPEQKVAGRN LQAPRTPASQ GRPMSTDDIQ KAKMRAQFMQ 480 SKYGKTGISN GRTHTKSENV NKPLHSSASS PASKISLRPK CEDQKKAMVL LPKNSNKVET 540 PLHSKIEVEF KDSLGETCKR VQIQWRMPPE MKFNDLWRVG GGDNSKEAGF QKNRNSREKE 600 TFYKTILEIP PNPKEPWDLE MDYDDSLTPE ILTEQLPDNE SSEPEIRNCV VDGAVPSEVI 660 SSQDLKPNAA ADEPDLELLA VLLKNPELVY ALTSSQAGNL PAQETVKLLD MIKAGVANGV 720 NGMEKTLEKV EVSLPSPTPS SDAGTSGWKP AVFKNPFSQR DSIAESRVAL PSPPVDTSSI 780 AVPSPPVDTS SIAVSRMPPV SQQLPASVSQ FSLGLQPNHV VDSHQHQHQQ GVLNPNVRLP 840 NSEKALALRS FPITKLPVVN LSTAAASSVR IEGGNVAKPV SFASSTLERV PISFQSPPSP 900 TPTRMPPIQQ QRQQPQLQPY RSEHPHQTRV NISSSSAEKS ATGLGSWRPR LQDIGSHYNS 960 GGNQNNESKY VRGPMAGRGG PSWGRNEFES WSPENSPVRT QEYSRADRSY GAAEQQRQSS 1020 SPYGYGEQSR HGNNSRRWHD RQY

Sequence ? help Back to Top

Protein Sequence Length: 1043 aa Download sequence

MEVVKDDFSN LEIGTSVESF QKFLDSQNDL FRSQVDQLQR VVVTQCKLTG ANPLSQEMAA  60
GALSITIGKR PRDLLNPKAV KYMQTVFSIK DALSKKESRE ISALFGVKVA QVRDFFNSQR  120
SRVRKLVRLS RERSIQSNSC KQLEVGGIAT NNDPSMPIDA VPLNSDALVP LNSDAPIPLN  180
SEAPVPLNFA TPVPLNTIEP SNVDNGPSCS TQDSKLSDID GIDKHFVQTI FSMMQKEETF  240
SGQVKLMEWI LQIQNSSVLC WFLTKDGAII LATWLSQAAA EEQTSLLHVI LEVFCHLPLH  300
KALPMHISAI LQSVNNLRFY RTSDISNRAR FLISRWSKLL IRSQALKKPN GMKLLTNSQT  360
DMILKQSIGG ITSDESWKSN IDIPENFGNP SVNVDNMRRF SFLHYGRCID LSMLVNGVFK  420
DNFLSWLIGF RERRKVQMVE QPEQKVAGRN LQAPRTPASQ GRPMSTDDIQ KAKMRAQFMQ  480
SKYGKTGISN GRTHTKSENV NKPLHSSASS PASKISLRPK CEDQKKAMVL LPKNSNKVET  540
PLHSKIEVEF KDSLGETCKR VQIQWRMPPE MKFNDLWRVG GGDNSKEAGF QKNRNSREKE  600
TFYKTILEIP PNPKEPWDLE MDYDDSLTPE ILTEQLPDNE SSEPEIRNCV VDGAVPSEVI  660
SSQDLKPNAA ADEPDLELLA VLLKNPELVY ALTSSQAGNL PAQETVKLLD MIKAGVANGV  720
NGMEKTLEKV EVSLPSPTPS SDAGTSGWKP AVFKNPFSQR DSIAESRVAL PSPPVDTSSI  780
AVPSPPVDTS SIAVSRMPPV SQQLPASVSQ FSLGLQPNHV VDSHQHQHQQ GVLNPNVRLP  840
NSEKALALRS FPITKLPVVN LSTAAASSVR IEGGNVAKPV SFASSTLERV PISFQSPPSP  900
TPTRMPPIQQ QRQQPQLQPY RSEHPHQTRV NISSSSAEKS ATGLGSWRPR LQDIGSHYNS  960
GGNQNNESKY VRGPMAGRGG PSWGRNEFES WSPENSPVRT QEYSRADRSY GAAEQQRQSS  1020
SPYGYGEQSR HGNNSRRWHD RQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-137	HB-other family protein