PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023514493.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 275aa MW: 31030.7 Da PI: 5.7649

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023514493.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126	1.9e-39	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC++dC+lapyfp++++++f n+hklFG+sn++k++k+l++ ++e+am+++++++++r dPv G++++i++lq+q++ +kael+ XP_023514493.1 13 ACAACKYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQSDVRSLDPVGGCYRIIRDLQRQIQYSKAELE 107 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++ XP_023514493.1 108 IVLHQ 112 98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
VSSSSSSTAT TQACAACKYQ RRKCVPDCIL APYFPHHRQR QFLNAHKLFG VSNITKIIKN 60 LDPFQKEEAM RTIIFQSDVR SLDPVGGCYR IIRDLQRQIQ YSKAELEIVL HQLAICKHQA 120 AASVSAAAAI LDADHPMSGI EHQFVEEGFV IGENENAESL DDEAADVWGI QASQISPCFS 180 FKSSVHDFDH INIHYHHQQF VKFHPDHHQF LHNNSEEEAG MVEIDNVILK EDSEPMQNDQ 240 DGEVEGAYNL WVFFVCFSEL FGSRAVTRST HVANS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-47	LBD family protein