PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023514410.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 550aa MW: 59885.8 Da PI: 5.8278

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023514410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	319	365	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Err RdriN+++ L+el+P + K +Ka++L +A+eY+k Lq XP_023514410.1 319 VHNLSERRHRDRINEKMKALQELIPRC-----NKTDKASMLDEAIEYLKTLQ 365 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MIGRLRMNHC VPDFEMADDF SLPTFSSLTR PRKSSMPDDD VVELLWQNGQ VVAHSQNQRS 60 VRKSPPSKFD VSIPQDQTAA VAAREIRPSS QLEEPHDLFM QEDEMASWLN YPLVEDHNFC 120 SDLLFPSMTA SLCGNSQTEP RPSATATVTL TQGPPTRLEK QSSVQFSRNR ATVESEPSNS 180 KAMVREATVV DSCDTPSVGP ESRASEIARR KLAEAVNGAD VWRETVCGSD GGGGASVSGD 240 GVGEKELVTC EMTVTSSPGG SSASAEPAAP KLAADDRKRK GRAPDDTECQ SEDVEYESTD 300 PKKQLRGSTS MKRSRAAEVH NLSERRHRDR INEKMKALQE LIPRCNKTDK ASMLDEAIEY 360 LKTLQLQVQM MSMGCGMMPM MFPGVQQYLP PPMGMGIGMG MGMGMEMGMN RPMMQFPNLL 420 AGSNLPMQAG AAAAAAAHLG QRFPLPAFAM PPVPGSNPSQ AQAMNNQPDP IVNPAGTQNT 480 TPPPVSGFPD SYQQFLSSNQ VQFHIAQAVQ VSFFGSHLHF VYKFSMFLKL VGIKISTKCH 540 CQPCESEPTS

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MIGRLRMNHC VPDFEMADDF SLPTFSSLTR PRKSSMPDDD VVELLWQNGQ VVAHSQNQRS  60
VRKSPPSKFD VSIPQDQTAA VAAREIRPSS QLEEPHDLFM QEDEMASWLN YPLVEDHNFC  120
SDLLFPSMTA SLCGNSQTEP RPSATATVTL TQGPPTRLEK QSSVQFSRNR ATVESEPSNS  180
KAMVREATVV DSCDTPSVGP ESRASEIARR KLAEAVNGAD VWRETVCGSD GGGGASVSGD  240
GVGEKELVTC EMTVTSSPGG SSASAEPAAP KLAADDRKRK GRAPDDTECQ SEDVEYESTD  300
PKKQLRGSTS MKRSRAAEVH NLSERRHRDR INEKMKALQE LIPRCNKTDK ASMLDEAIEY  360
LKTLQLQVQM MSMGCGMMPM MFPGVQQYLP PPMGMGIGMG MGMGMEMGMN RPMMQFPNLL  420
AGSNLPMQAG AAAAAAAHLG QRFPLPAFAM PPVPGSNPSQ AQAMNNQPDP IVNPAGTQNT  480
TPPPVSGFPD SYQQFLSSNQ VQFHIAQAVQ VSFFGSHLHF VYKFSMFLKL VGIKISTKCH  540
CQPCESEPTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	9e-65	bHLH family protein