PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023514219.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 403aa MW: 45371.1 Da PI: 6.2553 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.1 | 3.1e-08 | 32 | 52 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C ++++ G C +G+rC++ H+ XP_023514219.1 32 VCTYYQK-GRCAFGSRCRYDHV 52 6******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence |
MKVLCKYFAH GACLKGEYCE FSHDWTAPPS NVCTYYQKGR CAFGSRCRYD HVKVSHAESS 60 ASSNSQQPHV SESVSIAHTL LSSPLSPSPE STIELAGSKI SCLPSHVESA WSVECELPSG 120 LDDWGSRETR IISPADLPIC SFSAAGTNCP RGDNCPHIHG DLCPTCGKQC LHPFRTDERE 180 EHMKACEKKQ KHLESLKHSQ EIECSVCLER VLSKTEIAER KFGLLSECDH PFCISCIRNW 240 RNSSSTSGMD VNSALRACPI CRKLSYFVIP SVIWYSSKEE KQEIVDSYKS KLRSIDCKHF 300 NFGNGNCPFG SSCFYKHLVK PGSYTWKYHR PPPPRPRSQR TPPSRSNIVD MDAFFDMFED 360 LEDLDFSAED LDFEDLTPLE MAFVLMQLGC EANLSSDEEN YSF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 1e-133 | C3H family protein |