PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023514215.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 405aa MW: 45614.4 Da PI: 6.3519

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023514215.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.4	1.8e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC++fa G C G+ C F+H+ XP_023514215.1 3 KRVLCKYFAH-GACLKGEYCEFSHD 26 99**6666.***********5 PP
2	zf-CCCH	25.1	3.1e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C ++++ G C +G+rC++ H+ XP_023514215.1 34 VCTYYQK-GRCAFGSRCRYDHV 54 6****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MSKRVLCKYF AHGACLKGEY CEFSHDWTAP PSNVCTYYQK GRCAFGSRCR YDHVKVSHAE 60 SSASSNSQQP HVSESVSIAH TLLSSPLSPS PESTIELAGS KISCLPSHVE SAWSVECELP 120 SGLDDWGSRE TRIISPADLP ICSFSAAGTN CPRGDNCPHI HGDLCPTCGK QCLHPFRTDE 180 REEHMKACEK KQKHLESLKH SQEIECSVCL ERVLSKTEIA ERKFGLLSEC DHPFCISCIR 240 NWRNSSSTSG MDVNSALRAC PICRKLSYFV IPSVIWYSSK EEKQEIVDSY KSKLRSIDCK 300 HFNFGNGNCP FGSSCFYKHL VKPGSYTWKY HRPPPPRPRS QRTPPSRSNI VDMDAFFDMF 360 EDLEDLDFSA EDLDFEDLTP LEMAFVLMQL GCEANLSSDE ENYSF

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MSKRVLCKYF AHGACLKGEY CEFSHDWTAP PSNVCTYYQK GRCAFGSRCR YDHVKVSHAE  60
SSASSNSQQP HVSESVSIAH TLLSSPLSPS PESTIELAGS KISCLPSHVE SAWSVECELP  120
SGLDDWGSRE TRIISPADLP ICSFSAAGTN CPRGDNCPHI HGDLCPTCGK QCLHPFRTDE  180
REEHMKACEK KQKHLESLKH SQEIECSVCL ERVLSKTEIA ERKFGLLSEC DHPFCISCIR  240
NWRNSSSTSG MDVNSALRAC PICRKLSYFV IPSVIWYSSK EEKQEIVDSY KSKLRSIDCK  300
HFNFGNGNCP FGSSCFYKHL VKPGSYTWKY HRPPPPRPRS QRTPPSRSNI VDMDAFFDMF  360
EDLEDLDFSA EDLDFEDLTP LEMAFVLMQL GCEANLSSDE ENYSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-135	C3H family protein