PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023514155.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 582aa    MW: 65184.3 Da    PI: 8.3769
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023514155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS260.27.3e-801935742374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfs 94 
                     ++lL  cA+a+ +gd++++++lL+ l+elasp+gd+++Rlaay ++ALa+ l++  s+s+ +++l+p + ++++      +l  f+evsP++ f 
  XP_023514155.1 193 EQLLNPCANAIIKGDATRVHHLLCVLQELASPTGDANHRLAAYGLRALAHYLSSnsSCSSSSSTLAPVTFASTDPRFFQRSLIKFHEVSPWFAFP 287
                     689*************************************************99667777888888888887666666666666*********** PP

            GRAS  95 hltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvp 175
                     + +aN+ Il  +++e    + +Hi+D+++s+G+QWp+Ll+aL+ R+ ++pp +R+T++++  ++               ++ +rL +fA++l+++
  XP_023514155.1 288 NNIANSSILHILSEEpnrsRNLHILDIGVSHGVQWPTLLEALTRRSgGPPPLIRLTVIAPTLEHdqnaetpfsIGPPGDNISSRLLSFAKSLNIN 382
                     ************9999888899************************55566*******9976667777777766677899*************** PP

            GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysal 267
                     +++n l  ++l++l+ + +   p+E l+V+ +++lh+l    +  ++er e+L+ +++++Pk v+++e++  +++ n ++F ++f++++ey + +
  XP_023514155.1 383 LQINRLDNRSLQSLNSQVIGKFPDEILIVCAQFRLHQLK---HYAPDERFEFLQNLRKMEPKAVILSENNmaCSCnNCGNFDTGFTRKVEYLWRF 474
                     *****9999*****************************8...66667789********************555557788**************** PP

            GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                     +ds+++ +    + r + Er++++ e+ +++ +eg++    +e++ekW er+++aGF    ++e++ ++a++ +r+++ ++++rvee++g++ l 
  XP_023514155.1 475 LDSTSSAF----KGRESEERKVMEGEAAKALRNEGEM----NEEMEKWCERMRNAGFARKLFGEDTIDTARASMRRYDnNWEMRVEEKDGCVGLW 561
                     ****7775....77777777788888**********9....99999********************************9999************* PP

            GRAS 362 WkdrpLvsvSaWr 374
                     Wk++p+ ++S+W+
  XP_023514155.1 562 WKGQPVSFCSFWK 574
                     ************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    
MSLHHKPSNP LNSIFLPPSP HQKDIFSFPL CLKYFSPSKM TIEDHILDWL ADSVPFFSSP  60
FPDDSYNSSS INCYQWWDEN QDIGQDLING CLSSSPTTVS TKPPNNSTSH HLTPSDLTKK  120
RKAPDDTVHK PSQTQQNQRK NQNNQSKNGA DKSSGAVAGV TVMKKSVGNK RNSSKATGSN  180
NNNGNNKEGR WAEQLLNPCA NAIIKGDATR VHHLLCVLQE LASPTGDANH RLAAYGLRAL  240
AHYLSSNSSC SSSSSTLAPV TFASTDPRFF QRSLIKFHEV SPWFAFPNNI ANSSILHILS  300
EEPNRSRNLH ILDIGVSHGV QWPTLLEALT RRSGGPPPLI RLTVIAPTLE HDQNAETPFS  360
IGPPGDNISS RLLSFAKSLN INLQINRLDN RSLQSLNSQV IGKFPDEILI VCAQFRLHQL  420
KHYAPDERFE FLQNLRKMEP KAVILSENNM ACSCNNCGNF DTGFTRKVEY LWRFLDSTSS  480
AFKGRESEER KVMEGEAAKA LRNEGEMNEE MEKWCERMRN AGFARKLFGE DTIDTARASM  540
RRYDNNWEMR VEEKDGCVGL WWKGQPVSFC SFWKLGIKSN GG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-157GRAS family protein