PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023513861.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HD-ZIP

Protein Properties

Length: 318aa MW: 35477.4 Da PI: 5.994

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023513861.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.4e-18	163	217	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_023513861.1 163 RKKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 217 778899***********************************************98 PP
2	HD-ZIP_I/II	127.5	5.7e-41	163	253	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk XP_023513861.1 163 RKKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 253 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MELGLSLGDT PKPFRFVDKQ RQPQRGLSRP DLGFCVDLSI GRTIAGDKEG DEEKPNQREE 60 ESDGNEDPPI QLDLLPRNPV QRNLTNPYQG FPWPSSENDE VEDRSASPNS AASSFQMEFG 120 LYGGGGNISS RIDQMKNSVL NEVGESERAS SRASDEDENG STRKKLRLSK DQSAYLEESF 180 KEHNTLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCETLTEENR 240 RLQKELQELR ALKTTNSFYM QLPATTLTMC PSCERVTSTV ATATAGGVKL PGFAISGGAS 300 SSSFPFSAKT QTHQSTTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	168	TRKKLRL
2	212	220	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-71	HD-ZIP family protein