PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023513763.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 483aa MW: 52873.1 Da PI: 8.911

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023513763.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.4e-05	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023513763.1 59 FVCEICNKGFQRDQNLQLHRRGH 81 89*******************88 PP
2	zf-C2H2	13.8	0.00017	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_023513763.1 135 WKCEKCSKVYAVQSDWKAHSKTC 157 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MFATTMSNST SLSEEATVSL NSLLPPQKIK KKRSLPGNPD PDAEVIALSP RTLLATNRFV 60 CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NSKEVKKKAY VCPEPSCVHH HPSRALGDLT 120 GIKKHYCRKH GEKKWKCEKC SKVYAVQSDW KAHSKTCGTR EYRCDCGTLF SRKDSFITHR 180 AFCDALAEES ARLSANQFAI AAEVEAAGAE GGAATSTASA SAQSLFPFGS FNQFPSSSLS 240 RPPQTYMSLN PWDNPQNPNP NQTHQIIKPE DSHSHHFHQI PTLPLAGSSP STATNNPFGI 300 IQDHHRRHHP HHHQKAGSSS SSSMIASPFR NLHVSVNPAM SAHLSATALL QKAATVGVGA 360 VKSSQHQPES VGHMTHFNMP DIPEFAAPTH MDSLTHQLGP DYATWQKTDR LTRDFLGLTG 420 DGNGGGGGSG AMQVSMSVKD MLTYAGGLEI FKPHNNNNNN NNNNNNHSAF GFAEPAANET 480 WDC

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MFATTMSNST SLSEEATVSL NSLLPPQKIK KKRSLPGNPD PDAEVIALSP RTLLATNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NSKEVKKKAY VCPEPSCVHH HPSRALGDLT  120
GIKKHYCRKH GEKKWKCEKC SKVYAVQSDW KAHSKTCGTR EYRCDCGTLF SRKDSFITHR  180
AFCDALAEES ARLSANQFAI AAEVEAAGAE GGAATSTASA SAQSLFPFGS FNQFPSSSLS  240
RPPQTYMSLN PWDNPQNPNP NQTHQIIKPE DSHSHHFHQI PTLPLAGSSP STATNNPFGI  300
IQDHHRRHHP HHHQKAGSSS SSSMIASPFR NLHVSVNPAM SAHLSATALL QKAATVGVGA  360
VKSSQHQPES VGHMTHFNMP DIPEFAAPTH MDSLTHQLGP DYATWQKTDR LTRDFLGLTG  420
DGNGGGGGSG AMQVSMSVKD MLTYAGGLEI FKPHNNNNNN NNNNNNHSAF GFAEPAANET  480
WDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-113	C2H2 family protein