PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023513760.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 306aa MW: 34090.3 Da PI: 8.5529

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023513760.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.8	1.8e-39	52	128	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe+hsk+p+v++ g+eqrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ XP_023513760.1 52 CMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQP 128 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MYLRLRGIGH MGEGSMDDME GTRVTLIESS SSSSRLTKRS RTPYNGPQVP SCMVDGCSSD 60 LSKCRDYHRR HKVCEFHSKT PKVTICGREQ RFCQQCSRFH SLVEFDDRKR SCRKRLDGHN 120 RRRRKPQPAT IMLNAGRFLY SNQGPRFLPF GNQLLSASND LSSSWVGTIK PEHNDALCSS 180 NSQLDDADRR KSMFPGLSGC DYKEKQPPFL NVGSNNVGNV QKVMGNGCAL SLLSTPVEAG 240 EINNLTSMVQ SNLIPSSHFI HNDGLGFESD LVSPRLASDG SSDANIRCYS MFEDGPDGSS 300 IDLFRF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	125	RKRSCRKRLDGHNRRRRK
2	108	126	RKRSCRKRLDGHNRRRRKP
3	109	127	RKRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-45	SBP family protein