PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023513617.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 724aa    MW: 81260.5 Da    PI: 6.4591
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023513617.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1983138156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++ ++t+eq++e+e++F+++++p++++r++L+++lgL  +q+k+WFqNrR++ k
  XP_023513617.1  83 KKRKNRHTSEQIREMEKVFKESPHPDEKQRQKLSENLGLHSKQIKFWFQNRRTQIK 138
                     567788**********************************************9876 PP
2START191.15.3e-602534741205
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     e+a +a +e+vk+a+++ep+W +s     e +n+de++++f+ +       ++ea+r+sgvv+ +l++lv++++d+  qW+e+++    ka+t+e
  XP_023513617.1 253 EIAKKAIEEVVKMADSGEPLWIRSFetgrELLNYDEYMKQFAGEYEqqpkGEIEASRESGVVFVDLHRLVQSFMDVV-QWKEMFPsiisKASTIE 346
                     578999******************9999999**********6443377788**************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehv 170
                     v+++g      ga+qlm+aelq+l+p+ p R+++f+R++++l+ ++wv++dvS+++  +    s+s+   +++pSg++ie++sngh+kv+++eh+
  XP_023513617.1 347 VVCNGdgstrnGAVQLMFAELQMLTPVFPpREVYFIRTCKRLSPEKWVVADVSINNVGDSIDsSPSFC--RKRPSGCIIEDTSNGHCKVIVLEHW 439
                     *********************************************************99875445554..6************************ PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqce 205
                     ++++   + ++r +v+sgl++ga++w+at+q +ce
  XP_023513617.1 440 ECQKTKLRTMYRTIVNSGLIFGARHWMATMQTHCE 474
                     **********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    
MAVVMSDNRP SRRVMNVPSS PALSLTLAGV FQNAVDMGAD APVRREDSCS DNSEPAGSRS  60
AEDLGVEPDD EDEDEDKGLG NRKKRKNRHT SEQIREMEKV FKESPHPDEK QRQKLSENLG  120
LHSKQIKFWF QNRRTQIKVS LERQEMEKLR EENQALKEMI NKSSCLKCCS SANSIAISMD  180
SMFTSSDQKQ QQLVTEIVRL KAEVEGLKTA LEQYAPAGTS RSRLGESEDA IEGRRNLEKS  240
KRIFGLEKAR VMEIAKKAIE EVVKMADSGE PLWIRSFETG RELLNYDEYM KQFAGEYEQQ  300
PKGEIEASRE SGVVFVDLHR LVQSFMDVVQ WKEMFPSIIS KASTIEVVCN GDGSTRNGAV  360
QLMFAELQML TPVFPPREVY FIRTCKRLSP EKWVVADVSI NNVGDSIDSS PSFCRKRPSG  420
CIIEDTSNGH CKVIVLEHWE CQKTKLRTMY RTIVNSGLIF GARHWMATMQ THCEWQVFYM  480
ATNVPMKDST GITTLGGRKS VLRLAQRMTS SVYQAMGASS SHTWTKVQSK IGENIRVASR  540
KNLNDPREPL GLILCAVASV WLPISPKLLF EFLINGSRRI EWDVMLSGPV ETLAVFAKGQ  600
NRGNAVTIQA IKSDESNKWI IQDTLTNDYE STVIYAQIDI TSMQSVMVGC DPSTITTLPM  660
GFSILPDGHP PRASVISKSK EERVTEGGSL LTIATQTSQS AEYVNDFVSH MLENIKASLQ  720
VEDD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein