PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023513487.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 491aa    MW: 54717.1 Da    PI: 5.2555
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023513487.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.44e-951264841374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lL+ec  a+s ++l +a+++L +l ++asp+g ++ +R+++yf+ A+++r+ +s  ++++ l          ++  +++++f++vsP++kf+
  XP_023513487.1 126 LISLLFECSVAISVDNLVEAHRMLLELTQMASPYGqSSAERVVTYFAAAMSSRVINSILGICSPLLD-------YKSISNSFQIFNNVSPLIKFA 213
                     5799*******************************889******************77777754432.......345567899************ PP

            GRAS  95 hltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     hl+ Nq+Ile+++++ + +HiiD+di+qG+QWp+L+qaL+++   + + ++RiT++g       e l  tg++L+++A++lg++fe+n+ +a+++
  XP_023513487.1 214 HLASNQTILESLSQCvDPIHIIDLDIMQGIQWPPLFQALTTKMddSRSRHVRITAMGT----TMELLLDTGKQLSNIARQLGLSFEYNP-IATKV 303
                     ***************9**************************9666678*********....99*************************.79*** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      ++++++ ++++gE+++Vn+v   h l+d ++s  +    +L l+++l Pkv+++veq++ h ++s+l+rf+++l+yysa+fdsl a l++++++
  XP_023513487.1 304 GKVDVSMVKLRQGETVVVNWVR--HCLYDATGSDWK----TLGLIQQLGPKVFTFVEQDMCH-GGSYLDRFVSSLHYYSAIFDSLGACLSSNDSN 391
                     *********************9..889988888888....********************99.779***************************** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     r+ vE+ +l rei n++a  g++r   +e++++Wr+ l+++ + +vp+s + ++qa l+l++ + ++g+++ + +g ++ l Wkd +L+++S+W+
  XP_023513487.1 392 RNQVEHNILYREINNILAIGGSSR-SGEEKFKEWRSELRKC-LMEVPMSANSMAQAWLMLNMQSnNQGFSLVQGEGGALkLRWKDTSLYTASSWT 484
                     **********************95.56788*********99.678*******************9****99877666666**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    
MSAIKMAPCS FINNLSHPYI FFLSPYPQSF AFPMKLSRPE VDNGCLLQPP DPDEPWDFEL  60
PSSTSNTPIF HNQAFNLQSS NEFAFSVDHV NDLLESSTDD TTNGDELQVH VGNGRSKDVD  120
DHGLTLISLL FECSVAISVD NLVEAHRMLL ELTQMASPYG QSSAERVVTY FAAAMSSRVI  180
NSILGICSPL LDYKSISNSF QIFNNVSPLI KFAHLASNQT ILESLSQCVD PIHIIDLDIM  240
QGIQWPPLFQ ALTTKMDDSR SRHVRITAMG TTMELLLDTG KQLSNIARQL GLSFEYNPIA  300
TKVGKVDVSM VKLRQGETVV VNWVRHCLYD ATGSDWKTLG LIQQLGPKVF TFVEQDMCHG  360
GSYLDRFVSS LHYYSAIFDS LGACLSSNDS NRNQVEHNIL YREINNILAI GGSSRSGEEK  420
FKEWRSELRK CLMEVPMSAN SMAQAWLMLN MQSNNQGFSL VQGEGGALKL RWKDTSLYTA  480
SSWTRCNVGV A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-118GRAS family protein