PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023513403.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 722aa    MW: 79400 Da    PI: 5.636
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023513403.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.1e-2059115157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL+++l+L+  qVk+WFqN+R+++k+
  XP_023513403.1  59 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMKN 115
                     688999************************************************995 PP
2START2252.2e-702494691206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el ++a+ +ep+W++s       +n+de+l++f+++ +     ++ ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a+tl
  XP_023513403.1 249 ELAVAAMEELTRMAQMGEPLWMTSLdgstHVLNEDEYLRTFPRGIGpkpagFKCEASRESAVVIMNHINLVEILMDVN-QWSTLFSgivsRAMTL 342
                     57899********************9999999***********999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      galq+m++e+q++splvp R++++vRy++q+g+g+w++vdvS+d  ++ p    +vR++++pSg+li++++ng+skvtwvehv
  XP_023513403.1 343 EVLSTGvagnynGALQVMTSEFQVPSPLVPtRESYYVRYCKQHGDGTWAVVDVSLDDVRPTP----GVRCRRRPSGCLIQEMPNGYSKVTWVEHV 433
                     ************************************************************99....6**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h+l+++lv+sg+a+gak+wv tl+rqce+
  XP_023513403.1 434 EVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCER 469
                     **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    
MFQSSMMDGQ LLPLDMPQNT SKSDLARIRD DDFDSATKSD SDNNHELVSG DDQDPRPKKK  60
RYHRHTQHQI QEMEAFFKEC PHPDDKQRKE LSRELNLEPL QVKFWFQNKR TQMKNQHERH  120
ENTQLRTENE KLRADNMRYR EALSNASCPN CGGPTAIGEM SFDEHHLRLE NARLREEIDR  180
ISAIAAKYIG KPVVNYPLLS PPVPSRPLEL GMGNFGPQPG LGGDIHASPG DLIRSISGPI  240
EADKPMIIEL AVAAMEELTR MAQMGEPLWM TSLDGSTHVL NEDEYLRTFP RGIGPKPAGF  300
KCEASRESAV VIMNHINLVE ILMDVNQWST LFSGIVSRAM TLEVLSTGVA GNYNGALQVM  360
TSEFQVPSPL VPTRESYYVR YCKQHGDGTW AVVDVSLDDV RPTPGVRCRR RPSGCLIQEM  420
PNGYSKVTWV EHVEVDDRGV HNLYKQLVSS GQAFGAKRWV TTLDRQCERL ASAMATNIST  480
GDVGVITNQE GRKSMLKLAE RMVISFCAGV SASTTHTWTT LSGTGADDVR VMTRKSIDDP  540
GRPPGIVLSA ATSFWLPVPP KTIFDFLRDE NSRSEWDILS NGGVVQEMAH IANGRDTGNC  600
VSLLRVNSTN SSQSNMLILQ ESCTDPTVSF VIYAPVDIVA MNVVLNGGDP DYVALLPSGF  660
AILPDGGGGE GVSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNNLIACTV ERIKASLSCE  720
AA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein