PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023513102.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 503aa    MW: 56248.6 Da    PI: 6.5071
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023513102.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS54.32.6e-17169249285
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                     ++ L++cA+avs++d  +aq+l+ +l++++s  g+pmqRl ay++e+L arla+s+s +yk+l+++e +    +e l+++++++
  XP_023513102.1 169 KKILIACAKAVSDNDVLMAQWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPA---RAELLSYMHILY 249
                     789****************************************************************99...666677776666 PP
2GRAS306.56.1e-94250503121374
            GRAS 121 qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrl 213
                     +G+QW++L+qa+asRp+ pp++RiTg+++p+s   +   l  +g+rL+k+A+  +vpfef+  +a +  d++ ++L++++gEalaVn++++lh++
  XP_023513102.1 250 EGTQWITLIQAFASRPGRPPHIRITGIDDPASAyaRGGGLDIVGRRLSKLAKLYNVPFEFHS-AAISGCDVQQKNLSIRRGEALAVNFAFMLHHM 343
                     8******************************9999999************************.88899*************************** PP

            GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
                     +desvs+e++rd++L+lvk+lsPkvv+vveqe+++n++ F  rf+e+l+yy a+f+s++++lpr+++eri++E+++l+re+vn++acegaer+er
  XP_023513102.1 344 PDESVSTENHRDRLLRLVKGLSPKVVTVVEQESNTNTAAFYPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVER 438
                     *********************************************************************************************** PP

            GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     he l+kWr r+ +aGF+++pls+ +++++k+ll +++++ yr+ee++g+l+lgW+dr Lv+ +aW+
  XP_023513102.1 439 HELLGKWRLRFAMAGFTAYPLSSLVNATIKTLLDNYSNR-YRIEEREGALYLGWMDRDLVASCAWK 503
                     *************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    
MQASQLHRDS HMSKRLCYQP IQGADTYCFS QLCSSAGNQR AQLNVDDIGD RYCTLESSSG  60
SQGYAAHNST SNVTFSSNGS TISQQDSRSN PSDQHNSIDY AYGSPVSGSS ITDDLSDFRH  120
KLRELESVML GPDSDVIDSF DSIFQEGTEN PEMGTWGQVM DVITKGSLKK ILIACAKAVS  180
DNDVLMAQWL MDELRKMVSV CGEPMQRLGA YMLEGLVARL ASSGSCIYKS LRCKEPARAE  240
LLSYMHILYE GTQWITLIQA FASRPGRPPH IRITGIDDPA SAYARGGGLD IVGRRLSKLA  300
KLYNVPFEFH SAAISGCDVQ QKNLSIRRGE ALAVNFAFML HHMPDESVST ENHRDRLLRL  360
VKGLSPKVVT VVEQESNTNT AAFYPRFIET LDYYNAMFES IDVTLPRQHK ERINIEQHCL  420
AREVVNILAC EGAERVERHE LLGKWRLRFA MAGFTAYPLS SLVNATIKTL LDNYSNRYRI  480
EEREGALYLG WMDRDLVASC AWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein