PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023512989.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 151aa    MW: 17119.8 Da    PI: 8.7514
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023512989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.11.5e-43211211101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+C+kdC++apyfp ++p kfa+vhk+FGasnv+k+l++++ ++r d++ss+vyeA+ar+rdPvyG+vg+i+ lq++++qlk +la
  XP_023512989.1  21 PCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQNVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLKMQLA 115
                     7********************************************************************************************** PP

          DUF260  96 llkeel 101
                     ++++e+
  XP_023512989.1 116 EVQAEI 121
                     *99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    
MRRRLSTSRF HVVLMEASSS PCASCKLLRR RCTKDCIFAP YFPPNDPLKF AIVHKIFGAS  60
NVSKMLQNVS VDQRADTVSS IVYEANARMR DPVYGCVGII SFLQNEVSQL KMQLAEVQAE  120
ILSFQMQQPV APMTFPTTQM DQSYMFEHSS N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.13e-64LBD family protein