PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023512850.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 340aa    MW: 36766.9 Da    PI: 6.9775
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023512850.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24.1e-17259292134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs+C +  Tp+WR gp+g ktLCnaCG++y++ +
  XP_023512850.1 259 CSHCLVQRTPQWRTGPNGAKTLCNACGVRYKSGR 292
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MECLEAKALK SSFHWELAMK FAQPDAMVEE GGCSNGADLV AGEDFEVDEF LNFSNGDFEH  60
GSALRVQEDD DYEEFEKNRL SVSPYSNQSG GIPTAGEEGS KAVVGVELAI PNQNRNPTSQ  120
GDALADLEWV SQFVDDSGSE YSCAAVSLNR SKPEKKLTGA VISCLPTSFP VRPRTKRPRQ  180
SRQAKSTSSS LNQSSSSSSL SSSSGVSSAA PWFIFSDAGE NVDYLNVSGQ PTKKQRKKSS  240
AAAAVLQPVG PTGQIPRRCS HCLVQRTPQW RTGPNGAKTL CNACGVRYKS GRLFPEYRPA  300
LSPTFCSGIH SNSHRKVLEM RKTKEVPEPA SDLAPMVPSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-44GATA family protein