PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023512848.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 331aa    MW: 35726.9 Da    PI: 6.6581
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023512848.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24e-17250283134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs+C +  Tp+WR gp+g ktLCnaCG++y++ +
  XP_023512848.1 250 CSHCLVQRTPQWRTGPNGAKTLCNACGVRYKSGR 283
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MECLEAKALK SSFHWELAMK FAQPDAMVEE GGCSNGADLV AGEDFEVDEF LNFSNGDFEH  60
GSALRVQEDD DYEEFEKNRL SVSPYSNQSG GIPTAGEEGS KAVVGVELAI PGDALADLEW  120
VSQFVDDSGS EYSCAAVSLN RSKPEKKLTG AVISCLPTSF PVRPRTKRPR QSRQAKSTSS  180
SLNQSSSSSS LSSSSGVSSA APWFIFSDAG ENVDYLNVSG QPTKKQRKKS SAAAAVLQPV  240
GPTGQIPRRC SHCLVQRTPQ WRTGPNGAKT LCNACGVRYK SGRLFPEYRP ALSPTFCSGI  300
HSNSHRKVLE MRKTKEVPEP ASDLAPMVPS Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-47GATA family protein