PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023512831.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 438aa MW: 47793.4 Da PI: 7.6986

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023512831.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.1	1.2e-12	47	72	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C+yG++C+F+H+ XP_023512831.1 47 PGEPDCLYYMRTGSCSYGSNCRFNHP 72 5789*********************8 PP
2	zf-CCCH	36.1	1.1e-11	91	115	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_023512831.1 91 QPDCEYFLKTGTCKYGGSCKYHHPR 115 789********************96 PP
3	zf-CCCH	37.2	4.9e-12	138	160	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G +CkF+H++ XP_023512831.1 138 SCPYYLRTGSCKFGVSCKFNHPQ 160 6********************97 PP
4	zf-CCCH	39.8	7.7e-13	280	305	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ CkF+H++ XP_023512831.1 280 DQPECRYFMNNGTCKYGSDCKFHHPK 305 689*********************96 PP
5	zf-CCCH	33.8	5.6e-11	323	347	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+++ +G CkyG++CkF H+ XP_023512831.1 323 GQAVCSYYNMYGLCKYGPSCKFDHP 347 7899********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MPDNLQVQRN AVPNQSPDIS EALWRLEISD NQDGGDAAES SPYPDRPGEP DCLYYMRTGS 60 CSYGSNCRFN HPAFVAQGAM YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA 120 GPVRFNILGL PMRQEEKSCP YYLRTGSCKF GVSCKFNHPQ PSPVGNMLHP ARPGALGSAG 180 TPFMPASGVP YTGAVPAWSL PRVQYMPGPC VQGQQSFVPV LVSPSQGAIA AQDWNTYVGN 240 VSPVLPNLGY NSINLEEPYS NGQLASSTAT PTPTLPDRPD QPECRYFMNN GTCKYGSDCK 300 FHHPKQRIAQ SATNPLGLPS RPGQAVCSYY NMYGLCKYGP SCKFDHPSAT YPYNYGFTLP 360 VLDSSFMKYP SNNFTMSSHE ALPQTVSKSS EWVQKADPSN NKRRTTNSKV VVNSTAEEAT 420 TVSCSLPGGS ETLQDQSG

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MPDNLQVQRN AVPNQSPDIS EALWRLEISD NQDGGDAAES SPYPDRPGEP DCLYYMRTGS  60
CSYGSNCRFN HPAFVAQGAM YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA  120
GPVRFNILGL PMRQEEKSCP YYLRTGSCKF GVSCKFNHPQ PSPVGNMLHP ARPGALGSAG  180
TPFMPASGVP YTGAVPAWSL PRVQYMPGPC VQGQQSFVPV LVSPSQGAIA AQDWNTYVGN  240
VSPVLPNLGY NSINLEEPYS NGQLASSTAT PTPTLPDRPD QPECRYFMNN GTCKYGSDCK  300
FHHPKQRIAQ SATNPLGLPS RPGQAVCSYY NMYGLCKYGP SCKFDHPSAT YPYNYGFTLP  360
VLDSSFMKYP SNNFTMSSHE ALPQTVSKSS EWVQKADPSN NKRRTTNSKV VVNSTAEEAT  420
TVSCSLPGGS ETLQDQSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-107	C3H family protein