PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023512651.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 669aa MW: 73507.7 Da PI: 5.9759 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.3 | 4.7e-07 | 274 | 294 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg XP_023512651.1 274 PCPEFRK-GTCRQGDACEYAHG 294 8******.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence |
MCCNSKSVSP NFVMNGRFKQ GKLGLCLSVL LEFSATDDLI GFRSAVEEHG YDIDEASLWY 60 GRSIGSKKMR YEERTPLMVA AMFGSLNVLS YIVHRGCVDV NRTCGSDGPT ALHCAVAGGS 120 AVSDQVVELL LDASADASAV DANGNRPSDL IGRDFSLASY SRRKVLQQLL NGWEEDGLGS 180 SEAIFYEMET LEPVEASSSW AARDGMEKKE YPVDLSLPDI KNEMYSTDEF RMYTFKIKPC 240 TRAYSHDWTE CPFVHPGENA RRRDLRKYHY SCVPCPEFRK GTCRQGDACE YAHGIFECWL 300 HPAQYRTRLC KDETGCTRKV CFFAHKPEEL RPLYASTGSA VPSPRSICGS SLDMASISSL 360 TLGSPSALMP SSSTPPLTPT GVSSPMGGTM WQTQPPTLQL PGSRLKASLS ARDVDLDVEL 420 LSLESQRRRQ KQLIDEISCL PSPSRWNNGL STTASFPSPR SSRNGELNGL GGMKPTNLEE 480 FFGSVDPAML PQLQGLSLDS MGSQVQSPSR IPMRQSLNRS FLSSYANSIG SPPARSSQPS 540 VSAAVSVLSP RGALFTNRSQ SFIEQNAMPS NLSDWGSPNG KLDWGIHGEE LNKLRKSASY 600 GFQGSSLATP TMHATAPEPD VSWVQSLVKD TPSENSVQLS MDEQQKQQLW HLDNSDLKQM 660 YMEQEQLVA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 1e-171 | C3H family protein |