PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023512378.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

CO-like

Protein Properties

Length: 366aa MW: 40510 Da PI: 4.6116

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023512378.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.9	3.2e-06	47	72	5	30
zf-B_box 5 kCpeHeekelqlfCedCqqllCedCl 30 C++++ ++++l C d+++ lC+ C XP_023512378.1 47 LCDKCNAHPAILRCMDDKVSLCQGCD 72 7************************6 PP
2	CCT	63	9.2e-22	310	353	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ XP_023512378.1 310 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 353 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MEPQCEFCGV EKAIVYCKSD SGRLCLHCDY IVHSANSLSR RHLRSLLCDK CNAHPAILRC 60 MDDKVSLCQG CDWSADDCSS LPQRTHLLHS YTGSPSTSEF SRICTSLLDS TSCTTAFDAT 120 ADWTSLTTPY VIADSIDLTD VEAPSAAENL NDVQTCCKFE TWIAAPASAS PENPSYQPDF 180 LSDDSNPPKD AETNENNDIC ESLNLGNLSL HSENGEGLFD SPKDTMKFEF DAGELECLLI 240 DRNFPVTESN VPVEDTIEVH SSISVSLSNI TGESSGADYQ DCGLSPAFLT ETSWDPSMEA 300 IGPLAKDRNR DKAKMRYNEK KKTRTFGKQI RYASRKARAD TRKRVKGRFV KAGEAYDYDP 360 LVTRNF

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MEPQCEFCGV EKAIVYCKSD SGRLCLHCDY IVHSANSLSR RHLRSLLCDK CNAHPAILRC  60
MDDKVSLCQG CDWSADDCSS LPQRTHLLHS YTGSPSTSEF SRICTSLLDS TSCTTAFDAT  120
ADWTSLTTPY VIADSIDLTD VEAPSAAENL NDVQTCCKFE TWIAAPASAS PENPSYQPDF  180
LSDDSNPPKD AETNENNDIC ESLNLGNLSL HSENGEGLFD SPKDTMKFEF DAGELECLLI  240
DRNFPVTESN VPVEDTIEVH SSISVSLSNI TGESSGADYQ DCGLSPAFLT ETSWDPSMEA  300
IGPLAKDRNR DKAKMRYNEK KKTRTFGKQI RYASRKARAD TRKRVKGRFV KAGEAYDYDP  360
LVTRNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	9e-74	CO-like family protein