PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023512376.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

CO-like

Protein Properties

Length: 411aa MW: 45337.3 Da PI: 4.5917

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023512376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.4	2.2e-06	47	72	5	30
zf-B_box 5 kCpeHeekelqlfCedCqqllCedCl 30 C++++ ++++l C d+++ lC+ C XP_023512376.1 47 LCDKCNAHPAILRCMDDKVSLCQGCD 72 7************************6 PP
2	CCT	62.8	1.1e-21	355	398	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ XP_023512376.1 355 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 398 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MEPQCEFCGV EKAIVYCKSD SGRLCLHCDY IVHSANSLSR RHLRSLLCDK CNAHPAILRC 60 MDDKVSLCQG CDWSADDCSS LPQRTHLLHS YTGSPSTSEF SRICTSLLDS TSCTTAFDAT 120 ADWTSLTTPY VIADSIDLTD VEAPSAAENL NDVQTCCKFE TWIAAPASAS PENPSYQPDF 180 LSDDSNPPKD AETNENNDIC ESLNLGNLSL HSENGEGLFD SPKDTMKFEF DAGELECLLI 240 DRNFPVTESN VPVEDTIEAS DYTGFQSSEV DISMNMIRNG NSNCTLINPS CKGNFNIGFP 300 TAQVHSSISV SLSNITGESS GADYQDCGLS PAFLTETSWD PSMEAIGPLA KDRNRDKAKM 360 RYNEKKKTRT FGKQIRYASR KARADTRKRV KGRFVKAGEA YDYDPLVTRN F

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MEPQCEFCGV EKAIVYCKSD SGRLCLHCDY IVHSANSLSR RHLRSLLCDK CNAHPAILRC  60
MDDKVSLCQG CDWSADDCSS LPQRTHLLHS YTGSPSTSEF SRICTSLLDS TSCTTAFDAT  120
ADWTSLTTPY VIADSIDLTD VEAPSAAENL NDVQTCCKFE TWIAAPASAS PENPSYQPDF  180
LSDDSNPPKD AETNENNDIC ESLNLGNLSL HSENGEGLFD SPKDTMKFEF DAGELECLLI  240
DRNFPVTESN VPVEDTIEAS DYTGFQSSEV DISMNMIRNG NSNCTLINPS CKGNFNIGFP  300
TAQVHSSISV SLSNITGESS GADYQDCGLS PAFLTETSWD PSMEAIGPLA KDRNRDKAKM  360
RYNEKKKTRT FGKQIRYASR KARADTRKRV KGRFVKAGEA YDYDPLVTRN F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	2e-73	CO-like family protein