PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023512287.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SRS

Protein Properties

Length: 429aa MW: 43903.2 Da PI: 7.1767

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023512287.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	212.2	1.3e-65	209	366	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 s t++CqdCGnqakkdC+ RCRtCC+srgfdCathvkstWvpaa+rrerq ++ + ++ + +s +++ +k++r +++++s+t++s+++++ XP_023512287.1 209 SATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLI---ASQTTSHTSTSNTTPP 300 57899*******************************************99999999999999999999999986...5566677777888888 PP DUF702 98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++tss lP +++++avf+cvrv++vddge+e+aYq++v+igGhvfkG+LydqG+e XP_023512287.1 301 GSIDTSSshqdagfkeeLPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGVE 366 88888877889999999*********************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
HPPSVVATTR RLPSDSGAFA DWAAPSSSAG RAPPDDLSLG FNAAPAVAPP AGPPAPLWSA 60 AAAAQRSLNY GLGSEMGMVG LRDVYVVAPA ASFNPNPHHH DPNLISDDHS LAASNSATAL 120 GVGVGVGVIP LLTAGPCLGV EEDNLLGSRS GSRGGGIQLW QQNQQSTQHY LKKTPSSSLD 180 HHLHNASGTN NDLIGGGIGV FGGLASSSSA TTTCQDCGNQ AKKDCSRGRC RTCCRSRGFD 240 CATHVKSTWV PAARRRERQL MAITGTAADG SSGSASGTKK PRLIASQTTS HTSTSNTTPP 300 GSIDTSSSHQ DAGFKEELPG QIRAPAVFKC VRVTAVDDGE DEYAYQAVVK IGGHVFKGFL 360 YDQGVEAGDG FPNVSELHLS DGGGGSRNNR NGSSSAPFVD PSDVYNAAAS GNGGAPGFLG 420 GSNYGNQIR

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

HPPSVVATTR RLPSDSGAFA DWAAPSSSAG RAPPDDLSLG FNAAPAVAPP AGPPAPLWSA  60
AAAAQRSLNY GLGSEMGMVG LRDVYVVAPA ASFNPNPHHH DPNLISDDHS LAASNSATAL  120
GVGVGVGVIP LLTAGPCLGV EEDNLLGSRS GSRGGGIQLW QQNQQSTQHY LKKTPSSSLD  180
HHLHNASGTN NDLIGGGIGV FGGLASSSSA TTTCQDCGNQ AKKDCSRGRC RTCCRSRGFD  240
CATHVKSTWV PAARRRERQL MAITGTAADG SSGSASGTKK PRLIASQTTS HTSTSNTTPP  300
GSIDTSSSHQ DAGFKEELPG QIRAPAVFKC VRVTAVDDGE DEYAYQAVVK IGGHVFKGFL  360
YDQGVEAGDG FPNVSELHLS DGGGGSRNNR NGSSSAPFVD PSDVYNAAAS GNGGAPGFLG  420
GSNYGNQIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	3e-70	SRS family protein