PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023512278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | WRKY | ||||||||
Protein Properties | Length: 249aa MW: 27604.5 Da PI: 6.041 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103 | 1.6e-32 | 131 | 188 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYY+Cts++C+vkk+vers+edp +v++tYeg+Hnh XP_023512278.1 131 EDGYRWRKYGQKAVKNSPFPRSYYKCTSQNCSVKKRVERSSEDPCFVVTTYEGKHNHY 188 8********************************************************5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MSNNEDHEKD PYYPNFEAFD PSNVGFYSDF LYDYNNFLST DIDISCSSSE AISPINDALK 60 KSLGLGESVA IGEHPSTPNS STTCSSVEAA AGGSDSAKSG EVKLDGRKKK EKREKGPRFA 120 FLTKSEIDNL EDGYRWRKYG QKAVKNSPFP RSYYKCTSQN CSVKKRVERS SEDPCFVVTT 180 YEGKHNHYCP ITLRGHNVAG VYPPSASPSL IPARILSGEF YGGVDVQQQY YEVPGYGVLE 240 DLVNPKQNP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 112 | RKKKEK |
2 | 107 | 114 | RKKKEKRE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 9e-42 | WRKY family protein |