PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023512010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 21107.8 Da PI: 4.9151 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.6 | 9.2e-43 | 35 | 134 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p+kfa++h++FGasn++k+l++lpe++r da+sslvyeA ar+rdPvyG++g i +lq+q+++l+a+la XP_023512010.1 35 PCAACKILRRRCAEGCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLA 129 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_023512010.1 130 KAQAE 134 *9976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MEGSDSIITL SSTPPSPSPS SSSSPAPPPP VVLSPCAACK ILRRRCAEGC VLAPYFPPTE 60 PAKFAIAHRV FGASNIIKFL QELPESQRAD AVSSLVYEAS ARIRDPVYGS AGAICQLQKQ 120 VNELQAQLAK AQAEVVNMQC QQANLVAFVC RELAQSHQSS FDDLNADSHS GLFQSISSPS 180 YFDDTNVNPL WEPLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 8e-62 | LBD family protein |