PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023511943.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 734aa    MW: 82820.2 Da    PI: 5.0021
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023511943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.56.6e-1083577311373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avss+d + a +lL++++++++ +gd  qR+a++f +AL+ar+++++++      + ++s+ + ++ l+a+++    +P+ k+s 
  XP_023511943.1 357 LRNLLILCAQAVSSDDRRIAYELLKQIRQHSTTTGDGSQRMAHFFSNALEARMVGTGTGSRIYYDSLAQSNISAADMLKAYQAHLSSCPFKKLSL 451
                     6899**************************************************94444333344455554559********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +   ++Il+ +e+++ +H+iDf+i +G+ Wp L+q La  p+gpp+lRiTg++ p +g   +e+++e g+rLak++e+++vpf++++++++++e+
  XP_023511943.1 452 FFMIKMILKVAENAKSLHVIDFGICYGFLWPMLIQFLALLPDGPPKLRITGIDYPLPGfrPEEKIQESGRRLAKYCERFKVPFQYQAIASNNWET 546
                     *******************************************************99999****************************999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+++++++l+Vn+ ++  +llde+v+ +s+rd vL+l+++++P+++v++  + ++n++ F +rf eal ++sal+d+l+++lpr+seer+
  XP_023511943.1 547 IQVEDLKLDSNDVLVVNCFYRFNSLLDETVEESSPRDIVLRLIRKMNPNIFVHSVVNGSYNAPFFITRFREALFHFSALYDALDVNLPRDSEERM 641
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     ++Ere+lgr+i+nvvaceg +r+er e +++W+ r ++aGFk++pl+++++++ ++ l  ++ + + ++e++g++++gWk+r +++ ++W
  XP_023511943.1 642 MLEREFLGRQIMNVVACEGVQRVERPEPYKQWQVRCMRAGFKQLPLDKEIMCKFRTKLTSHYHKDFVLDEDEGWMLQGWKGRIVYASCCW 731
                     **************************************************************888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    
MDPNLNAFTD RMADYQTSLT QSYDDGFRLN DFEFNDPSPD FVPFVDNSLF PYQPNPNKFP  60
GAVDLNLGGV ASGQSPDGDS SSDELDFRES VLKYISQMLM EENLEEKPCM FYDPLGLENT  120
EKSFYDALGK NYPPPSPNQP PLDCESSEDV CRGSDSDRTS TAVSAANSNS PDPQWVVDPG  180
ESKSSILTRS IPSSSYQSSL TINSHELVTE LLAQNIFSDS TSILQYQKGL EEASKFLPVG  240
NQLNIDLGSG KFTGVASKVT DTTENSPNGS KRRKNRGPEA IDLDSEEGRK NKHATIYGDE  300
EELTDMFDKV LLHDCGSEAS ANGGCEKLQN NRQVHGGSNA GKAREKKQDK RNNSVDLRNL  360
LILCAQAVSS DDRRIAYELL KQIRQHSTTT GDGSQRMAHF FSNALEARMV GTGTGSRIYY  420
DSLAQSNISA ADMLKAYQAH LSSCPFKKLS LFFMIKMILK VAENAKSLHV IDFGICYGFL  480
WPMLIQFLAL LPDGPPKLRI TGIDYPLPGF RPEEKIQESG RRLAKYCERF KVPFQYQAIA  540
SNNWETIQVE DLKLDSNDVL VVNCFYRFNS LLDETVEESS PRDIVLRLIR KMNPNIFVHS  600
VVNGSYNAPF FITRFREALF HFSALYDALD VNLPRDSEER MMLEREFLGR QIMNVVACEG  660
VQRVERPEPY KQWQVRCMRA GFKQLPLDKE IMCKFRTKLT SHYHKDFVLD EDEGWMLQGW  720
KGRIVYASCC WVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein