PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022964610.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 447aa MW: 48528.8 Da PI: 9.0309

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022964610.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022964610.1 70 FVCEICNKGFQRDQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	11.4	0.00098	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_022964610.1 147 WKCDKCSKKYAVQSDWKAHSKIC 169 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MMKGSFLSQQ QQLLMDQTLS NLTSPSSPNN PTQFFSPPPP KRKRNLAGNP DPDAEVIALS 60 PKTLIATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RSNKEVIKKK VYVCPEPSCV 120 HHDPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TKEYKCDCGT 180 LFSRRDSFIT HRAFCDALAD ESARSAMALS PLISNYNNSQ ELLFKRGFGG GDSSNNDDNN 240 LKTEIPSWLQ SDEIFVGSTQ QTLNPNPSGL VSPCVSSPHI SATALLQKAA QMGATMSSGS 300 MGRTHEVVHV STGNYGEMGI RSREGGMGVS CSSSSCCTDY GNKAAAVSAA VLATATPSGP 360 TTFLHDMINS LASASHPFHQ DSSAFNAAAF AAMHHHTAAG RSDGLTRDFL GLRPLSHGDI 420 LSITGFGNCI VPNSATLQSQ TQKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MMKGSFLSQQ QQLLMDQTLS NLTSPSSPNN PTQFFSPPPP KRKRNLAGNP DPDAEVIALS  60
PKTLIATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RSNKEVIKKK VYVCPEPSCV  120
HHDPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TKEYKCDCGT  180
LFSRRDSFIT HRAFCDALAD ESARSAMALS PLISNYNNSQ ELLFKRGFGG GDSSNNDDNN  240
LKTEIPSWLQ SDEIFVGSTQ QTLNPNPSGL VSPCVSSPHI SATALLQKAA QMGATMSSGS  300
MGRTHEVVHV STGNYGEMGI RSREGGMGVS CSSSSCCTDY GNKAAAVSAA VLATATPSGP  360
TTFLHDMINS LASASHPFHQ DSSAFNAAAF AAMHHHTAAG RSDGLTRDFL GLRPLSHGDI  420
LSITGFGNCI VPNSATLQSQ TQKPWQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-107	C2H2 family protein