PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022964469.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 427aa MW: 46452.2 Da PI: 9.8133

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022964469.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	194	217	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++Cp Cg+ F L+ H+++ H XP_022964469.1 194 FPCPECGEIFMKAQALELHQSVrH 217 89******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MASAMAKPKT QRKLTRQSHE NQKPKAQKAE KPPSWAVVRG IFSCKYLQPQ QQQQNQLPRK 60 EKQTEQATEE SSKNCKKMRC SGSLCSNTKV TYRLEVAASP DAHKKRALAS SMGSKNNESL 120 SSSRSTKAPP LNEQNGVLSA TTSSLSASSS SNSSNGTSFR GMPFRRFYGC YECKMVIDPV 180 LGMTRDPSLR ATIFPCPECG EIFMKAQALE LHQSVRHAVS ELGPEDTSKN IVEIIFQSSW 240 LKKQAPICKI ERILKVQNTA KTISKFEEYR DSIKAKAIKL SKKHPRCIAD GNELLRFHCT 300 TLACSLGLNG SSNLCSSIPQ CNVCSIIKNG FKVAAEATGG DAGKGILTTA TSGKAHDSAG 360 ISSDGNDKRA MLVCRVIAGR VKKSSEGTME DYDSLAGAAG MYSNLDELYV FSPKAILPCF 420 VVIYGGF

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MASAMAKPKT QRKLTRQSHE NQKPKAQKAE KPPSWAVVRG IFSCKYLQPQ QQQQNQLPRK  60
EKQTEQATEE SSKNCKKMRC SGSLCSNTKV TYRLEVAASP DAHKKRALAS SMGSKNNESL  120
SSSRSTKAPP LNEQNGVLSA TTSSLSASSS SNSSNGTSFR GMPFRRFYGC YECKMVIDPV  180
LGMTRDPSLR ATIFPCPECG EIFMKAQALE LHQSVRHAVS ELGPEDTSKN IVEIIFQSSW  240
LKKQAPICKI ERILKVQNTA KTISKFEEYR DSIKAKAIKL SKKHPRCIAD GNELLRFHCT  300
TLACSLGLNG SSNLCSSIPQ CNVCSIIKNG FKVAAEATGG DAGKGILTTA TSGKAHDSAG  360
ISSDGNDKRA MLVCRVIAGR VKKSSEGTME DYDSLAGAAG MYSNLDELYV FSPKAILPCF  420
VVIYGGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	5e-87	C2H2 family protein