PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022964298.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 581aa    MW: 65051.2 Da    PI: 8.2607
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022964298.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS259.31.3e-791935732374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL  cA+a+ +gd++++++lL+ l+elasp+gd+++Rlaay ++ALa+ l++ s+ + +++l+p + ++++      +l  f+evsP++ f +
  XP_022964298.1 193 EQLLNPCANAIIKGDATRVHHLLCVLQELASPTGDANHRLAAYGLRALAHYLSSnSSCSSSSTLAPVTFASTDPRFFQRSLIKFHEVSPWFAFPN 287
                     689**************************************************955556667778888887666666666666************ PP

            GRAS  96 ltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpf 176
                      +aN+ Il  +++e    + +Hi+D+++s+G+QWp+Ll+aL+ R+ ++pp +R+T++++  ++               ++ +rL +fA++l++++
  XP_022964298.1 288 NIANSSILHILSEEpnrsRNLHILDIGVSHGVQWPTLLEALTRRSgGPPPLIRLTVIAPTVEHdqnaetpfsIGPPGDNISSRLLSFAKSLNINL 382
                     ***********9999888899************************55566*******9987777777777766677899**************** PP

            GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalf 268
                     ++n l + +l +l+ + +   p+E l+V+ +++lh+l    +  ++er e+L+ +++++Pk v+++e++  +++ n ++F ++f++++ey + ++
  XP_022964298.1 383 QINRLDSLSLLSLNAQVIGKFPDEILIVCAQFRLHQLK---HYAPDERFEFLQNLRKIEPKAVILSENNmaCSCtNCGNFDTGFTRKVEYLWRFL 474
                     ****9888999999999********************8...66667789********************554557899***************** PP

            GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362
                     ds+++ +    + r + Er+l++ e+ +++ +eg++    +e++ekW er+++aGF    ++e++ ++a++ +r+++ ++++rvee++g++ l W
  XP_022964298.1 475 DSTSSAF----KGRESEERKLMEGEAAKALRNEGEM----NEEMEKWCERMRNAGFARKLFGEDTIDTARASMRRYDnNWEMRVEEKDGCVGLWW 561
                     ***8886....88888899999999**********9....99999********************************9999************** PP

            GRAS 363 kdrpLvsvSaWr 374
                     k++p+ ++S+W+
  XP_022964298.1 562 KGQPVSFCSFWK 573
                     ***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    
MSLHHKPSNP LNSIFLPPSP YQKDIFSFPL CLKYFSPSKM TIEDHILDWL ADSVPFFSSP  60
FPDDSYNSSS INCYQWWDEN QDIGQDLING CLSSSPTTVS TKPPNTSTSH HLTPSDLTKK  120
RKAPDDTVHK PSQTQQNQRK NQNNQSRNGA DKSSGAVAGV TVMKKSVGNK RNSSKATGNN  180
NNNGNNKEGR WAEQLLNPCA NAIIKGDATR VHHLLCVLQE LASPTGDANH RLAAYGLRAL  240
AHYLSSNSSC SSSSTLAPVT FASTDPRFFQ RSLIKFHEVS PWFAFPNNIA NSSILHILSE  300
EPNRSRNLHI LDIGVSHGVQ WPTLLEALTR RSGGPPPLIR LTVIAPTVEH DQNAETPFSI  360
GPPGDNISSR LLSFAKSLNI NLQINRLDSL SLLSLNAQVI GKFPDEILIV CAQFRLHQLK  420
HYAPDERFEF LQNLRKIEPK AVILSENNMA CSCTNCGNFD TGFTRKVEYL WRFLDSTSSA  480
FKGRESEERK LMEGEAAKAL RNEGEMNEEM EKWCERMRNA GFARKLFGED TIDTARASMR  540
RYDNNWEMRV EEKDGCVGLW WKGQPVSFCS FWKLGMKSNG G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-159GRAS family protein